RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 HOXA6P31267 233 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 ARL4DP49703 201 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 ATP12AP54707 1039 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 FAPQ12884 760 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 INSL4Q14641 139 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 RFPL4BQ6ZWI9 263 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 TMPRSS9Q7Z410 1059 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 OR4C3Q8NH37 302 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 ENKURQ8TC29 256 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 BRIX1Q8TDN6 353 aaKnown RBP9.85□□□□□ -0.83
CLIP1-210ENST00000538120 GRHL3Q8TE85 626 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 MVB12AQ96EY5 273 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 SLC38A2Q96QD8 506 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 UBQLN3Q9H347 655 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.85□□□□□ -0.83
CLIP1-210ENST00000538120 MMACHCQ9Y4U1 282 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 LY6G6EA0A0G2JKS1 128 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 NCR1O76036 304 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 IFI30P13284 250 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 CTBP2P56545 445 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 SLC37A1P57057 533 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 BIKQ13323 160 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 C1DQ13901 141 aaKnown RBP9.85□□□□□ -0.83
CLIP1-210ENST00000538120 NDUFAF6Q330K2 333 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 CEP78Q5JTW2 689 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 LYSMD4Q5XG99 296 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 WDR74Q6RFH5 385 aaPredicted RBP9.85□□□□□ -0.83
CLIP1-210ENST00000538120 PRR23CQ6ZRP0 262 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 TMPRSS11FQ6ZWK6 438 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 DEFB123Q8N688 67 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 SNAPC3Q92966 411 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 CCDC74AQ96AQ1 378 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 ZNF501Q96CX3 271 aaPredicted RBP9.85□□□□□ -0.83
CLIP1-210ENST00000538120 RNFT2Q96EX2 444 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 OR1F2PQ96R84 312 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 PELOQ9BRX2 385 aaKnown RBP9.85□□□□□ -0.83
CLIP1-210ENST00000538120 G6PC3Q9BUM1 346 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 ZNF426Q9BUY5 554 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 TMEM27Q9HBJ8 222 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 FGF20Q9NP95 211 aaPredicted RBP9.85□□□□□ -0.83
CLIP1-210ENST00000538120 B3GAT2Q9NPZ5 323 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 PNO1Q9NRX1 252 aaKnown RBP9.85□□□□□ -0.83
CLIP1-210ENST00000538120 C14orf105Q9NVL8 296 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 GMEB2Q9UKD1 530 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 ALG5Q9Y673 324 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 U3KQA8 63 aa9.85□□□□□ -0.83
CLIP1-210ENST00000538120 TP53BP1Q12888 1972 aaPredicted RBP9.85□□□□□ -0.83
CLIP1-210ENST00000538120 A8MUA0 341 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 SEC14L5O43304 696 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 HPGDSO60760 199 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 ZNF780AO75290 641 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-210ENST00000538120 RAB36O95755 333 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 NGFRP08138 427 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 CPEP16870 476 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 SLC9A3P48764 834 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 DHPSP49366 369 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-210ENST00000538120 FABP5Q01469 135 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 QPRTQ15274 297 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.84□□□□□ -0.83
CLIP1-210ENST00000538120 MINDY4Q4G0A6 757 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 DDI2Q5TDH0 399 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 LINC00114Q6XXX2 140 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 ZNF574Q6ZN55 896 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-210ENST00000538120 GDPD1Q8N9F7 314 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 BBS1Q8NFJ9 593 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 OR4M1Q8NGD0 313 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 HS6ST2Q96MM7 605 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 OR52D1Q9H346 318 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 FSCN3Q9NQT6 498 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 NLKQ9UBE8 527 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 PRODH2Q9UF12 536 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 LAMP5Q9UJQ1 280 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 SF3B6Q9Y3B4 125 aaKnown RBP9.84□□□□□ -0.83
CLIP1-210ENST00000538120 SERINC4A6NH21 518 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 BHLHE40O14503 412 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 CHP2O43745 196 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 PTP4A3O75365 173 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 DDAH2O95865 285 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 IGKV3-11P04433 115 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 EPHA8P29322 1005 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-210ENST00000538120 ARRB1P49407 418 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-210ENST00000538120 P2RX3P56373 397 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 RAB25P57735 213 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 RAC1P63000 192 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 RAB40BQ12829 278 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 KLHL22Q53GT1 634 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 KLHL26Q53HC5 615 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 C3orf38Q5JPI3 329 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 PMS2CLQ68D20 193 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 PLET1Q6UQ28 207 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 HSDL2Q6YN16 418 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 QSOX2Q6ZRP7 698 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 OR2T33Q8NG76 320 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 UPRTQ96BW1 309 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 BPIFA2Q96DR5 249 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 KCTD7Q96MP8 289 aa9.84□□□□□ -0.83
CLIP1-210ENST00000538120 GFM1Q96RP9 751 aaKnown RBP9.84□□□□□ -0.83
CLIP1-210ENST00000538120 ZNF768Q9H5H4 540 aaKnown RBP9.84□□□□□ -0.83
CLIP1-210ENST00000538120 KRCC1Q9NPI7 259 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-210ENST00000538120 MED17Q9NVC6 651 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms