RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 SF3A3Q12874 501 aaKnown RBP eCLIP13.09□□□□□ -0.31
USP28-204ENST00000537642 ITGADQ13349 1161 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 CEACAM7Q14002 265 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 GLIPR1L2Q4G1C9 344 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 BEX5Q5H9J7 111 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 DHRS4L2Q6PKH6 230 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 PTOV1Q86YD1 416 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 ZNF100Q8IYN0 542 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 KISS1RQ969F8 398 aaPredicted RBP13.09□□□□□ -0.31
USP28-204ENST00000537642 NAA11Q9BSU3 229 aaPredicted RBP13.09□□□□□ -0.31
USP28-204ENST00000537642 NOSIPQ9Y314 301 aaKnown RBP13.09□□□□□ -0.31
USP28-204ENST00000537642 ITPR3Q14573 2671 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 A8MVM7 634 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 FBP2O00757 339 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 GPR171O14626 319 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 NPIPB7O75200 414 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 LYZL6O75951 148 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 CNOT4O95628 575 aaKnown RBP13.08□□□□□ -0.32
USP28-204ENST00000537642 VIMP08670 466 aaKnown RBP13.08□□□□□ -0.32
USP28-204ENST00000537642 COX5AP20674 150 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 IGHV1-2P23083 117 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 AQP1P29972 269 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 ARFIP2P53365 341 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 GUCY1A3Q02108 690 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 NFYCQ13952 458 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 OR7A5Q15622 319 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 DEFB113Q30KQ7 82 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 PAQR6Q6TCH4 344 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 BHLHA15Q7RTS1 189 aaPredicted RBP13.08□□□□□ -0.32
USP28-204ENST00000537642 KRT73Q86Y46 540 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 TMEM99Q8N816 258 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 HIPK4Q8NE63 616 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 ALPK1Q96QP1 1244 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 SPATA5L1Q9BVQ7 753 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 CCDC134Q9H6E4 229 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 FLVCR1Q9Y5Y0 555 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 CADP27708 2225 aa13.08□□□□□ -0.32
USP28-204ENST00000537642 AKR7A3O95154 331 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 IGHV3-9P01782 118 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 GPIP06744 558 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 HTR2AP28223 471 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 ADSLP30566 484 aaPredicted RBP13.07□□□□□ -0.32
USP28-204ENST00000537642 PCBP3P57721 371 aaKnown RBP13.07□□□□□ -0.32
USP28-204ENST00000537642 CAPRIN1Q14444 709 aaKnown RBP13.07□□□□□ -0.32
USP28-204ENST00000537642 SLC17A1Q14916 467 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 TAB1Q15750 504 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 CYP51A1Q16850 503 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 HSP90B2PQ58FF3 399 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 OTUD3Q5T2D3 398 aaPredicted RBP13.07□□□□□ -0.32
USP28-204ENST00000537642 C1orf140Q5VVS0 124 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 ALKBH2Q6NS38 261 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 NET1Q7Z628 596 aaPredicted RBP13.07□□□□□ -0.32
USP28-204ENST00000537642 C11orf65Q8NCR3 313 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 STK35Q8TDR2 534 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 APH1AQ96BI3 265 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 PLPPR2Q96GM1 343 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 ZNF607Q96SK3 696 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 WFDC6Q9BQY6 131 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 PRR14Q9BWN1 585 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 KAT8Q9H7Z6 458 aaKnown RBP13.07□□□□□ -0.32
USP28-204ENST00000537642 UBTD1Q9HAC8 227 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 SAR1AQ9NR31 198 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 ANGPT4Q9Y264 503 aa13.07□□□□□ -0.32
USP28-204ENST00000537642 ARID1AO14497 2285 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 A0A1B0GWA3 101 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 PRORSD1PA6NEY8 169 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 AQP7P3A6NL99 342 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 MRPL33O75394 65 aaKnown RBP13.06□□□□□ -0.32
USP28-204ENST00000537642 SERPINB7O75635 380 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 MFN2O95140 757 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 PLAUP00749 431 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 P2RY4P51582 365 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 NR1H2P55055 460 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 EGR4Q05215 589 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 DMTNQ08495 405 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 RBBP4Q09028 425 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 KLF10Q13118 480 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 ACKR1Q16570 336 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 FBXW9Q5XUX1 488 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 C6orf89Q6UWU4 347 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 SEZ6L2Q6UXD5 910 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 ZNF704Q6ZNC4 412 aaPredicted RBP13.06□□□□□ -0.32
USP28-204ENST00000537642 ARMC8Q8IUR7 673 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 ZNF433Q8N7K0 673 aaPredicted RBP13.06□□□□□ -0.32
USP28-204ENST00000537642 LSMEM1Q8N8F7 131 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 HSD17B8Q92506 261 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 USB1Q9BQ65 265 aaKnown RBP13.06□□□□□ -0.32
USP28-204ENST00000537642 TMEM204Q9BSN7 226 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 PTDSS2Q9BVG9 487 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 TAPBPLQ9BX59 468 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 MED4Q9NPJ6 270 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 RPS6KB2Q9UBS0 482 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 SLC9A8Q9Y2E8 581 aa13.06□□□□□ -0.32
USP28-204ENST00000537642 ELOA3DA6NLF2 546 aaPredicted RBP13.05□□□□□ -0.32
USP28-204ENST00000537642 FTCDNL1E5RQL4 147 aa13.05□□□□□ -0.32
USP28-204ENST00000537642 TPST2O60704 377 aa13.05□□□□□ -0.32
USP28-204ENST00000537642 GZMMP51124 257 aa13.05□□□□□ -0.32
USP28-204ENST00000537642 TRMT5Q32P41 509 aaKnown RBP13.05□□□□□ -0.32
USP28-204ENST00000537642 ELOA3BQ3SY89 546 aa13.05□□□□□ -0.32
USP28-204ENST00000537642 CASP12Q6UXS9 341 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms