RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 EVCP57679 992 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 HERV-K104P63124 156 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 ARG2P78540 354 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 HTD2P86397 168 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 RIGQ13278 110 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 TAB1Q15750 504 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 FAM106AQ4KMX7 169 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 CT45A2Q5DJT8 189 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 TCTEX1D4Q5JR98 221 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 SPANXN4Q5MJ08 99 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 ISLR2Q6UXK2 745 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 VPS36Q86VN1 386 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 NLRP14Q86W24 1093 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 TEX9Q8N6V9 391 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 CCL4L1Q8NHW4 92 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 TAF4BQ92750 862 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 ESAMQ96AP7 390 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 OMA1Q96E52 524 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 MRPL53Q96EL3 112 aaKnown RBP3.12□□□□□ -1.91
CD44-235ENST00000532339 C9orf72Q96LT7 481 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 NSMCE2Q96MF7 247 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 KRT12Q99456 494 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 S1PR3Q99500 378 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 AGPAT1Q99943 283 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 GSDMCQ9BYG8 508 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 REG4Q9BYZ8 158 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 SIRPDQ9H106 197 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 POLD4Q9HCU8 107 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 ACOXLQ9NUZ1 547 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 TAS2R3Q9NYW6 316 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.12□□□□□ -1.91
CD44-235ENST00000532339 NDUFA13Q9P0J0 144 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 MOB4Q9Y3A3 225 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 SELENOKQ9Y6D0 94 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 STAB2Q8WWQ8 2551 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 DNAH9Q9NYC9 4486 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 FREM1Q5H8C1 2179 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 RGSL1A5PLK6 1076 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 RASGRF2O14827 1237 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 SRSF10O75494 262 aaKnown RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 NXPH2O95156 264 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 DUS4LO95620 317 aaKnown RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 PTBP3O95758 552 aaKnown RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 STATHP02808 62 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 SFTPBP07988 381 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 CCNB1P14635 433 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 CCR4P51679 360 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 CCZ1BP86790 482 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 CCZ1P86791 482 aaPredicted RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 MEF2DQ14814 521 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 HEPACAMQ14CZ8 416 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 CCDC40Q4G0X9 1142 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 GLIPR1L2Q4G1C9 344 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 C2CD6Q53TS8 623 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 WLSQ5T9L3 541 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 KCTD16Q68DU8 428 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 RBM43Q6ZSC3 357 aaKnown RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 CCDC71Q8IV32 467 aaPredicted RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 OR56A4Q8NGH8 313 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 GPR148Q8TDV2 347 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 PATE1Q8WXA2 126 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 OR1E3Q8WZA6 343 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 RAB7BQ96AH8 199 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 SMARCD1Q96GM5 515 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 ZNF486Q96H40 463 aaPredicted RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 ZNF396Q96N95 335 aaPredicted RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 CCL19Q99731 98 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 SPAG8Q99932 426 aaPredicted RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 APOOQ9BUR5 198 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 VIPAS39Q9H9C1 493 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 LIN28AQ9H9Z2 209 aaKnown RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 DDX28Q9NUL7 540 aaKnown RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 MED29Q9NX70 200 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 PLEK2Q9NYT0 353 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 ZNF319Q9P2F9 582 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 FAM153AQ9UHL3 310 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 TEKT2Q9UIF3 430 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 RARRES3Q9UL19 164 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 WDR37Q9Y2I8 494 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 MRPS2Q9Y399 296 aaKnown RBP3.11□□□□□ -1.91
CD44-235ENST00000532339 KIF3AQ9Y496 699 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 OR1A2Q9Y585 309 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 ANGPTL3Q9Y5C1 460 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 CADP27708 2225 aa3.11□□□□□ -1.91
CD44-235ENST00000532339 hCG_38984A0A1B0GV85 526 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 A0A1W2PPR1 153 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 SURF4O15260 269 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 SLC16A4O15374 487 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 SIGLEC5O15389 551 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 NME2P1O60361 137 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 TM7SF2O76062 418 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 OR6B1O95007 311 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 PTMAP06454 111 aaKnown RBP3.1□□□□□ -1.91
CD44-235ENST00000532339 CAPN1P07384 714 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 EZRP15311 586 aaKnown RBP3.1□□□□□ -1.91
CD44-235ENST00000532339 C4BPBP20851 252 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 GPX3P22352 226 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 GLRA1P23415 457 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 EDNRAP25101 427 aa3.1□□□□□ -1.91
CD44-235ENST00000532339 HPDP32754 393 aaPredicted RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms