RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 OR2T27Q8NH04 317 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 ZNF431Q8TF32 576 aaPredicted RBP17.7■□□□□ 0.42
VPS28-213ENST00000530983 ZNRF4Q8WWF5 429 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 PATE1Q8WXA2 126 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 TRIM2Q9C040 744 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 STARD5Q9NSY2 213 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 AUP1Q9Y679 476 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 MCIDASD6RGH6 385 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 LRRN3E7EW58 273 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 GNB5O14775 395 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 IFI6P09912 130 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 ANXA3P12429 323 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 ENPP1P22413 925 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 GBX2P52951 348 aaPredicted RBP17.69■□□□□ 0.42
VPS28-213ENST00000530983 GAS6Q14393 721 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 TEX261Q6UWH6 196 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 SLC43A2Q8N370 569 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 SREK1IP1Q8N9Q2 155 aaPredicted RBP17.69■□□□□ 0.42
VPS28-213ENST00000530983 POMGNT2Q8NAT1 580 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 ASB12Q8WXK4 309 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 ADAMTS14Q8WXS8 1223 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 MS4A3Q96HJ5 214 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 MFRPQ9BY79 579 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 LRRN3Q9H3W5 708 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 COPZ2Q9P299 210 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 SPATA2Q9UM82 520 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 AK6Q9Y3D8 172 aaKnown RBP17.69■□□□□ 0.42
VPS28-213ENST00000530983 ENTPD2Q9Y5L3 495 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 U3KQ87 197 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 SYPP08247 313 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 GSG1Q2KHT4 349 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 MTFR2Q6P444 385 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 KIRREL2Q6UWL6 708 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 RNF44Q7L0R7 432 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 PRSS45Q7RTY3 260 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 SLC35F2Q8IXU6 374 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 ZNF687Q8N1G0 1237 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 ZNF680Q8NEM1 530 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 PDCD1LG2Q9BQ51 273 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 RANBP3Q9H6Z4 567 aaPredicted RBP17.69■□□□□ 0.42
VPS28-213ENST00000530983 EVA1AQ9H8M9 152 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 C12orf10Q9HB07 376 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 WBP1LQ9NX94 342 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 CAMK2AQ9UQM7 478 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 ADAM18Q9Y3Q7 739 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 IER3IP1Q9Y5U9 82 aa17.69■□□□□ 0.42
VPS28-213ENST00000530983 NDUFB2O95178 105 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 MT-ND4P03905 459 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 S1PR1P21453 382 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 KLF9Q13886 244 aaPredicted RBP17.68■□□□□ 0.42
VPS28-213ENST00000530983 UBE2Q1Q7Z7E8 422 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 OR8H3Q8N146 312 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 C7orf57Q8NEG2 295 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 LGALS14Q8TCE9 139 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 LRFN5Q96NI6 719 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 AUNIPQ9H7T9 357 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 DZANK1Q9NVP4 752 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 GNG8Q9UK08 70 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 COPS3Q9UNS2 423 aa17.68■□□□□ 0.42
VPS28-213ENST00000530983 TRBV2A0A0J9YWF9 115 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 TRABD2BA6NFA1 517 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 HCRTR1O43613 425 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 GSTZ1O43708 216 aaPredicted RBP17.67■□□□□ 0.42
VPS28-213ENST00000530983 GATBO75879 557 aaKnown RBP17.67■□□□□ 0.42
VPS28-213ENST00000530983 APBB3O95704 486 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 WNT1P04628 370 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 ADRB1P08588 477 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 HOXB2P14652 356 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 ZNF250P15622 560 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 PXDC1Q5TGL8 231 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 RPL22L1Q6P5R6 122 aaKnown RBP17.67■□□□□ 0.42
VPS28-213ENST00000530983 OVCH1Q7RTY7 1134 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 IZUMO1Q8IYV9 350 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 CSNK1A1LQ8N752 337 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 SNX33Q8WV41 574 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 DERL3Q96Q80 235 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 IGFLR1Q9H665 355 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 COQ3Q9NZJ6 369 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 PCDHGA9Q9Y5G4 932 aaKnown RBP17.67■□□□□ 0.42
VPS28-213ENST00000530983 LRP4O75096 1905 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 EML5Q05BV3 1969 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 HEATR5AQ86XA9 2040 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 IMPA2O14732 288 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 SLC35E2P0CK97 266 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 ST3GAL2Q16842 350 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 ALG11Q2TAA5 492 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 ULK3Q6PHR2 472 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 SLITRK4Q8IW52 837 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 SFTPA2Q8IWL1 248 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 OR14A16Q8NHC5 309 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 SMIM4Q8WVI0 70 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 GIMAP1Q8WWP7 306 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 LMF2Q9BU23 707 aaKnown RBP17.67■□□□□ 0.42
VPS28-213ENST00000530983 NRIP3Q9NQ35 241 aa17.67■□□□□ 0.42
VPS28-213ENST00000530983 C2orf74A8MZ97 194 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 CTDSPLO15194 276 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 RDH16O75452 317 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 OR7A10O76100 309 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 EDNRAP25101 427 aa17.66■□□□□ 0.42
VPS28-213ENST00000530983 VSX2P58304 361 aaPredicted RBP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms