RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 RP2O75695 350 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 LDOC1O95751 146 aaPredicted RBP13.09□□□□□ -0.31
USP48-213ENST00000529637 WDPCPO95876 746 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 EGFP01133 1207 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 APODP05090 189 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 H2BFSP57053 126 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 PITPNAQ00169 270 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 BDH1Q02338 343 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 MLC1Q15049 377 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 DEFB134Q4QY38 66 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 METTL11BQ5VVY1 283 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 GLDNQ6ZMI3 551 aaPredicted RBP13.09□□□□□ -0.31
USP48-213ENST00000529637 TPRA1Q86W33 373 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 BOLLQ8N9W6 283 aaKnown RBP13.09□□□□□ -0.31
USP48-213ENST00000529637 FAM98AQ8NCA5 519 aaKnown RBP13.09□□□□□ -0.31
USP48-213ENST00000529637 ZDHHC1Q8WTX9 485 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 LCORQ96JN0 433 aaPredicted RBP13.09□□□□□ -0.31
USP48-213ENST00000529637 C12orf57Q99622 126 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 RAB11FIP5Q9BXF6 653 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 SEMA4CQ9C0C4 833 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 MRTO4Q9UKD2 239 aaKnown RBP13.09□□□□□ -0.31
USP48-213ENST00000529637 CAMK2AQ9UQM7 478 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 OR5K4A6NMS3 321 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 RLN2P04090 185 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 GYPBP06028 91 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 CEACAM5P06731 702 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 CA3P07451 260 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 F3P13726 295 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 NOS3P29474 1203 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 FXYD6P3P58550 94 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 FAM74A1Q5RGS3 127 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 ZNF660Q6AZW8 331 aaPredicted RBP13.09□□□□□ -0.31
USP48-213ENST00000529637 ZNF614Q8N883 585 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 CDS1Q92903 461 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 SLC17A9Q9BYT1 436 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 SYNPO2LQ9H987 977 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 ADAP2Q9NPF8 381 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 WDR45Q9Y484 360 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 KLF2Q9Y5W3 355 aaPredicted RBP13.09□□□□□ -0.31
USP48-213ENST00000529637 VCANP13611 3396 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 A0A1B0GUH1 482 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 CDHR4A6H8M9 788 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 D6RAR5 112 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 ZNF888P0CJ79 500 aaPredicted RBP13.09□□□□□ -0.31
USP48-213ENST00000529637 IL9P15248 144 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 GDI1P31150 447 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 MAGEB1P43366 347 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 CLDN12P56749 244 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 RPE65Q16518 533 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 NUDT18Q6ZVK8 323 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 TMEFF1Q8IYR6 380 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 ZNF671Q8TAW3 534 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 IFT22Q9H7X7 185 aa13.09□□□□□ -0.31
USP48-213ENST00000529637 PTPRSQ13332 1948 aa13.08□□□□□ -0.31
USP48-213ENST00000529637 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.08□□□□□ -0.32
USP48-213ENST00000529637 GIPP09681 153 aaPredicted RBP13.08□□□□□ -0.32
USP48-213ENST00000529637 FPR3P25089 353 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 DCTDP32321 178 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 ADH7P40394 386 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 AGERQ15109 404 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 CSRP2Q16527 193 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 HEPHL1Q6MZM0 1159 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 ZNF613Q6PF04 617 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 TMEM64Q6YI46 380 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 MEPCEQ7L2J0 689 aaKnown RBP13.08□□□□□ -0.32
USP48-213ENST00000529637 HSD17B13Q7Z5P4 300 aaPredicted RBP13.08□□□□□ -0.32
USP48-213ENST00000529637 PDZD9Q8IXQ8 264 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 THEM6Q8WUY1 208 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 ANKRD19PQ9H560 264 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 ESRP2Q9H6T0 727 aaKnown RBP13.08□□□□□ -0.32
USP48-213ENST00000529637 FGF22Q9HCT0 170 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 MT-ND5P03915 603 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 RPS15P62841 145 aaKnown RBP13.08□□□□□ -0.32
USP48-213ENST00000529637 RPS21P63220 83 aaKnown RBP13.08□□□□□ -0.32
USP48-213ENST00000529637 PDSS1Q5T2R2 415 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 HES5Q5TA89 166 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 OR7E24Q6IFN5 339 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 GSG1LQ6UXU4 331 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 NRROSQ86YC3 692 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 CYB561A3Q8NBI2 242 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 SFXN5Q8TD22 340 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 ASB12Q8WXK4 309 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 SLC25A28Q96A46 364 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 C7orf50Q9BRJ6 194 aaKnown RBP13.08□□□□□ -0.32
USP48-213ENST00000529637 NDC1Q9BTX1 674 aa13.08□□□□□ -0.32
USP48-213ENST00000529637 ZNF768Q9H5H4 540 aaKnown RBP13.08□□□□□ -0.32
USP48-213ENST00000529637 GSTZ1O43708 216 aaPredicted RBP13.07□□□□□ -0.32
USP48-213ENST00000529637 FMO6PO60774 539 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 OR2A4O95047 310 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 NDUFV2P19404 249 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 C5AR1P21730 350 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 ERVK-25P63136 954 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 ZNF85Q03923 595 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 DCAF12L2Q5VW00 463 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 TMEM88Q6PEY1 159 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 FAM111BQ6SJ93 734 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 SPICQ8N5J4 248 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 FAM71CQ8NEG0 241 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 SLC35A4Q96G79 324 aa13.07□□□□□ -0.32
USP48-213ENST00000529637 SLC41A3Q96GZ6 507 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms