RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SEC14L4Q9UDX3 406 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 FLVCR1Q9Y5Y0 555 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 HEATR1Q9H583 2144 aaKnown RBP9.41□□□□□ -0.9
CD44-227ENST00000528086 DPRXA6NFQ7 191 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 DNPH1O43598 174 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 LYZL6O75951 148 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 AKR7A3O95154 331 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 THY1P04216 161 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 ITGA5P08648 1049 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 AQP1P29972 269 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 HOXC12P31275 282 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 PRKAR1BP31321 381 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 HTR3AP46098 478 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 CSNK2A1P68400 391 aaPredicted RBP9.4□□□□□ -0.9
CD44-227ENST00000528086 LTBQ06643 244 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 LGALS3BPQ08380 585 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 CEACAM7Q14002 265 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 CAPRIN1Q14444 709 aaKnown RBP9.4□□□□□ -0.9
CD44-227ENST00000528086 LARS2Q15031 903 aaKnown RBP9.4□□□□□ -0.9
CD44-227ENST00000528086 NPTX1Q15818 432 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 DEFB113Q30KQ7 82 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 WBP2NLQ6ICG8 309 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 C6orf89Q6UWU4 347 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 LINGO2Q7L985 606 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 GALNT5Q7Z7M9 940 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 DHDDSQ86SQ9 333 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 WFDC8Q8IUA0 241 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 P3H2Q8IVL5 708 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 ZNF440Q8IYI8 595 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 CADM2Q8N3J6 435 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 ZNF433Q8N7K0 673 aaPredicted RBP9.4□□□□□ -0.9
CD44-227ENST00000528086 WFDC11Q8NEX6 87 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 OR52E4Q8NGH9 312 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 KTI12Q96EK9 354 aaPredicted RBP9.4□□□□□ -0.9
CD44-227ENST00000528086 PLPPR2Q96GM1 343 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 ALPK1Q96QP1 1244 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 CCDC134Q9H6E4 229 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 KAT8Q9H7Z6 458 aaKnown RBP9.4□□□□□ -0.9
CD44-227ENST00000528086 SAR1AQ9NR31 198 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 THUMPD1Q9NXG2 353 aaKnown RBP9.4□□□□□ -0.9
CD44-227ENST00000528086 GMPR2Q9P2T1 348 aaKnown RBP9.4□□□□□ -0.9
CD44-227ENST00000528086 B3GAT1Q9P2W7 334 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 IFT52Q9Y366 437 aa9.4□□□□□ -0.9
CD44-227ENST00000528086 A0A1B0GWA3 101 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 CASKO14936 926 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 PPP3CBP16298 524 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 CD247P20963 164 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 DNASE1P24855 282 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 IRX1P78414 480 aaPredicted RBP9.39□□□□□ -0.91
CD44-227ENST00000528086 SLC25A3Q00325 362 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 FOXD4Q12950 439 aaPredicted RBP9.39□□□□□ -0.91
CD44-227ENST00000528086 KLF10Q13118 480 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 ITGADQ13349 1161 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 SCARB2Q14108 478 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 P2RY6Q15077 328 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 OR7A5Q15622 319 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 ACKR1Q16570 336 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 DUSP7Q16829 419 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 RABL3Q5HYI8 236 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 C1orf140Q5VVS0 124 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 METTL21CQ5VZV1 264 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 REEP3Q6NUK4 255 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 PAQR6Q6TCH4 344 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 WDR88Q6ZMY6 472 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 BHLHA15Q7RTS1 189 aaPredicted RBP9.39□□□□□ -0.91
CD44-227ENST00000528086 CALHM3Q86XJ0 350 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 TGIF2LYQ8IUE0 185 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 RBM45Q8IUH3 476 aaKnown RBP9.39□□□□□ -0.91
CD44-227ENST00000528086 EPHX4Q8IUS5 362 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 LSMEM1Q8N8F7 131 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 WDR31Q8NA23 367 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 TSPEARQ8WU66 669 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 C10orf82Q8WW14 230 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 SLC35B4Q969S0 331 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 TAMM41Q96BW9 452 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 REXO5Q96IC2 774 aaKnown RBP9.39□□□□□ -0.91
CD44-227ENST00000528086 SLC7A10Q9NS82 523 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 ZNF226Q9NYT6 803 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 MALT1Q9UDY8 824 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.39□□□□□ -0.91
CD44-227ENST00000528086 LEF1Q9UJU2 399 aaPredicted RBP9.39□□□□□ -0.91
CD44-227ENST00000528086 NDUFAF1Q9Y375 327 aa9.39□□□□□ -0.91
CD44-227ENST00000528086 C2CD3Q4AC94 2353 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 AQP7P3A6NL99 342 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 A8MVM7 634 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 OPN1SWP03999 348 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 PTNP21246 168 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 FUT4P22083 530 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 FKBP2P26885 142 aaKnown RBP9.38□□□□□ -0.91
CD44-227ENST00000528086 SLC35A1P78382 337 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 GNA13Q14344 377 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 BEX5Q5H9J7 111 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 NCMAPQ5T1S8 102 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 OTUD3Q5T2D3 398 aaPredicted RBP9.38□□□□□ -0.91
CD44-227ENST00000528086 TSPO2Q5TGU0 170 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 FBXW9Q5XUX1 488 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 NANOGP8Q6NSW7 305 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 ZNF704Q6ZNC4 412 aaPredicted RBP9.38□□□□□ -0.91
CD44-227ENST00000528086 STK32CQ86UX6 486 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 KDM8Q8N371 416 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms