RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 E9PBE3 544 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 GOLGA8NF8WBI6 632 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 CXCL13O43927 109 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 ZNF735P0CB33 412 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 PCMT1P22061 227 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 IGHV1-2P23083 117 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 CCNCP24863 283 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 MAP3K8P41279 467 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 DUSP3P51452 185 aaPredicted RBP3.19□□□□□ -1.9
CD44-223ENST00000526553 CRYBB1P53674 252 aaPredicted RBP3.19□□□□□ -1.9
CD44-223ENST00000526553 SEC61GP60059 68 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 RPL32P62910 135 aaKnown RBP3.19□□□□□ -1.9
CD44-223ENST00000526553 CCNA1P78396 465 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 OGDHQ02218 1023 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 ST3GAL3Q11203 375 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 GLYR1Q49A26 553 aaPredicted RBP3.19□□□□□ -1.9
CD44-223ENST00000526553 CFAP221Q4G0U5 840 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 TMEM52BQ4KMG9 183 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 C1orf220Q5T0J3 134 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 PAQR7Q86WK9 346 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 CDR2LQ86X02 465 aaPredicted RBP3.19□□□□□ -1.9
CD44-223ENST00000526553 C9orf40Q8IXQ3 194 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 BBS5Q8N3I7 341 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 OR2L5Q8NG80 312 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 OR51G2Q8NGK0 314 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 OR5L2Q8NGL0 311 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 FRAT1Q92837 279 aaPredicted RBP3.19□□□□□ -1.9
CD44-223ENST00000526553 CCNL2Q96S94 520 aaPredicted RBP3.19□□□□□ -1.9
CD44-223ENST00000526553 SPATA7Q9P0W8 599 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 ZNF639Q9UID6 485 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 COPS3Q9UNS2 423 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 MEMO1Q9Y316 297 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 IFT52Q9Y366 437 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 FLVCR1Q9Y5Y0 555 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 TNRQ92752 1358 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 FANCAO15360 1455 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 DENND4BO75064 1496 aaPredicted RBP3.19□□□□□ -1.9
CD44-223ENST00000526553 RAPGEF2Q9Y4G8 1499 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 FRMPD1Q5SYB0 1578 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 AKNAQ7Z591 1439 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 YEATS2Q9ULM3 1422 aa3.19□□□□□ -1.9
CD44-223ENST00000526553 CFAP74Q9C0B2 1584 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 ATP10AO60312 1499 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 NEO1Q92859 1461 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 NSD2O96028 1365 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 LOC100131303A0A0U1RQF7 123 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 WI2-2373I1.2A0A1W2PRP0 233 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 ARHGEF35A5YM69 484 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 CCDC182A6NF36 153 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 FCN1O00602 326 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 RTL8CO15255 209 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 PRKYO43930 277 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 AGTP01019 485 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 ALOX5P09917 674 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 UQCRFS1P1P0C7P4 283 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 COX5AP20674 150 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 GCAP28676 217 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 UGT1A5P35504 534 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 DAP3P51398 398 aaKnown RBP3.18□□□□□ -1.9
CD44-223ENST00000526553 PRKXP51817 358 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 PLK1P53350 603 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 STX17P56962 302 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 MRPS11P82912 194 aaKnown RBP3.18□□□□□ -1.9
CD44-223ENST00000526553 KLRB1Q12918 225 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 PLD1Q13393 1074 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 CUL2Q13617 745 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 KLHL38Q2WGJ6 581 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 PDZK1Q5T2W1 519 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 OR5M10Q6IEU7 315 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 FAM199XQ6PEV8 388 aaPredicted RBP3.18□□□□□ -1.9
CD44-223ENST00000526553 CCDC137Q6PK04 289 aaKnown RBP3.18□□□□□ -1.9
CD44-223ENST00000526553 H2BFWTQ7Z2G1 175 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 FAM228AQ86W67 206 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 EGFL6Q8IUX8 553 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 CADM2Q8N3J6 435 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 SVOPLQ8N434 492 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 C14orf178Q8N769 122 aaPredicted RBP3.18□□□□□ -1.9
CD44-223ENST00000526553 CEP112Q8N8E3 955 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 OR4D9Q8NGE8 314 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 UBE2E3Q969T4 207 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 C10orf35Q96D05 121 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 CELF6Q96J87 481 aaKnown RBP3.18□□□□□ -1.9
CD44-223ENST00000526553 SLC38A2Q96QD8 506 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 ZNF670Q9BS34 389 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 CHRDL1Q9BU40 450 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 ROPN1BQ9BZX4 212 aaPredicted RBP3.18□□□□□ -1.9
CD44-223ENST00000526553 AZI2Q9H6S1 392 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 ZNF702PQ9H963 129 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 NHEJ1Q9H9Q4 299 aaPredicted RBP3.18□□□□□ -1.9
CD44-223ENST00000526553 CAB39LQ9H9S4 337 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 POLE4Q9NR33 117 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 PLSCR3Q9NRY6 295 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 ONECUT1Q9UBC0 465 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 SPRR3Q9UBC9 169 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 WARS2Q9UGM6 360 aaKnown RBP3.18□□□□□ -1.9
CD44-223ENST00000526553 PHF11Q9UIL8 331 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 RIMS3Q9UJD0 308 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 SIGLEC1Q9BZZ2 1709 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 EFCAB5A4FU69 1503 aa3.18□□□□□ -1.9
CD44-223ENST00000526553 ZFYVE16Q7Z3T8 1539 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms