RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 OR4F5Q8NH21 305 aa11.84□□□□□ -0.51
NKX3-1-202ENST00000523261 AURKBQ96GD4 344 aaPredicted RBP11.84□□□□□ -0.51
NKX3-1-202ENST00000523261 OR11A1Q9GZK7 315 aa11.84□□□□□ -0.51
NKX3-1-202ENST00000523261 DUSP22Q9NRW4 184 aa11.84□□□□□ -0.51
NKX3-1-202ENST00000523261 ACER3Q9NUN7 267 aa11.84□□□□□ -0.51
NKX3-1-202ENST00000523261 LOC100653049A0A140TA62 436 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 HMX2A2RU54 273 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 PDPK1O15530 556 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 SKAP2O75563 359 aaPredicted RBP11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 KRT34O76011 436 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 CBR1P16152 277 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 NR4A1P22736 598 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 RAG2P55895 527 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 MAD2L1BPQ15013 274 aaPredicted RBP11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 TAF9Q16594 264 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 AAED1Q7RTV5 226 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 REC114Q7Z4M0 266 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 TREML1Q86YW5 311 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 WDFY1Q8IWB7 410 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 FAM110DQ8TAY7 271 aaPredicted RBP11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 TMEM234Q8WY98 164 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 CIDECQ96AQ7 238 aaPredicted RBP11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 ZNF385AQ96PM9 386 aaKnown RBP11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 CCDC106Q9BWC9 280 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 ZNF385DQ9H6B1 395 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 CTPS2Q9NRF8 586 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 CHRNA9Q9UGM1 479 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 SPIN1Q9Y657 262 aaPredicted RBP11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 COL7A1Q02388 2944 aa11.83□□□□□ -0.52
NKX3-1-202ENST00000523261 ZNF587BE7ETH6 402 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 SMIM24O75264 130 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 HOXB1P14653 301 aaPredicted RBP11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 SELEP16581 610 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 APOBEC1P41238 236 aaKnown RBP11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 CLK1P49759 484 aaKnown RBP11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 ATP4BP51164 291 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 LCN2P80188 198 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 RASA2Q15283 850 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 ATP6AP1LQ52LC2 224 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 OTUD3Q5T2D3 398 aaPredicted RBP11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 MROH9Q5TGP6 573 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 LINGO2Q7L985 606 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 LRP11Q86VZ4 500 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 GSPT2Q8IYD1 628 aaKnown RBP11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 STACQ99469 402 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 SYT3Q9BQG1 590 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 C1QTNF3Q9BXJ4 246 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 KRTAP17-1Q9BYP8 105 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 TRIM31Q9BZY9 425 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 LAT2Q9GZY6 243 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 PIGUQ9H490 435 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 GRHL1Q9NZI5 618 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 TMEM181Q9P2C4 612 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 MYEF2Q9P2K5 600 aaKnown RBP11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 TRAPPC4Q9Y296 219 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 JRKLQ9Y4A0 524 aa11.82□□□□□ -0.52
NKX3-1-202ENST00000523261 PPIAL4EA0A075B759 164 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 PPIAL4CA0A0B4J2A2 164 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 CLPSL1A2RUU4 121 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 ZNF503-AS2A6NEH8 195 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 FAM181BA6NEQ2 426 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 PPIAL4DF5H284 164 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 CDC14BO60729 498 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 EIF1BO60739 113 aaKnown RBP11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 KRT33AO76009 404 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 URI1O94763 535 aaPredicted RBP11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 NGFP01138 241 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 RBP1P09455 135 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 PPIAL4FP0DN26 164 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 HMOX2P30519 316 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 HSD17B3P37058 310 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 RELBQ01201 579 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 HLXQ14774 488 aaPredicted RBP11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 DCST2Q5T1A1 773 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 ANKRD26P1Q6NSI1 321 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 RETREG3Q86VR2 466 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 LSRQ86X29 649 aaPredicted RBP11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 IL17RDQ8NFM7 739 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 METTL6Q8TCB7 284 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 MRAPQ8TCY5 172 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 RAB8BQ92930 207 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 CHMP6Q96FZ7 201 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 ALKBH3Q96Q83 286 aaPredicted RBP11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 CRLF2Q9HC73 371 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 WIPI2Q9Y4P8 454 aa11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 POLR3HQ9Y535 204 aaPredicted RBP11.81□□□□□ -0.52
NKX3-1-202ENST00000523261 CYP7B1O75881 506 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 HMGN2P05204 90 aaKnown RBP11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 GSTA2P09210 222 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 NAT2P11245 290 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 IMPDH2P12268 514 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 FKBP2P26885 142 aaKnown RBP11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 ARR3P36575 388 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 ANP32AP39687 249 aaKnown RBP11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 FRKP42685 505 aaPredicted RBP11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 MAGEB1P43366 347 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 LOXL3P58215 753 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 SLC35A1P78382 337 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 DR1Q01658 176 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 CLCQ05315 142 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms