RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 C10orf111Q8N326 155 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 SLC25A43Q8WUT9 341 aaPredicted RBP8.29□□□□□ -1.08
HDAC3-215ENST00000519474 WDR60Q8WVS4 1066 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 SGCDQ92629 289 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 SPDL1Q96EA4 605 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 MAGEB18Q96M61 343 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 ZNF300Q96RE9 604 aaPredicted RBP8.29□□□□□ -1.08
HDAC3-215ENST00000519474 TMUB1Q9BVT8 246 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 NSRP1Q9H0G5 558 aaKnown RBP8.29□□□□□ -1.08
HDAC3-215ENST00000519474 OR10A4Q9H209 315 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 FKBP14Q9NWM8 211 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 CALML5Q9NZT1 146 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 CCDC167Q9P0B6 97 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 KLHL9Q9P2J3 617 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 PRSS50Q9UI38 385 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 TMED7Q9Y3B3 224 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 HDGFL3Q9Y3E1 203 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 MYO9AB2RTY4 2548 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 DSPPQ9NZW4 1301 aa8.29□□□□□ -1.08
HDAC3-215ENST00000519474 POLQO75417 2590 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 IGKV3D-15A0A087WSY6 115 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 ZC3H12DA2A288 527 aaKnown RBP8.28□□□□□ -1.08
HDAC3-215ENST00000519474 CDHR4A6H8M9 788 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 ZNF716A6NP11 495 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 NDUFAB1O14561 156 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 ZNF208O43345 1280 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 PGM3O95394 542 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 PLAUP00749 431 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 FPR1P21462 350 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 HOXC12P31275 282 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 HTR3AP46098 478 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 ATP4BP51164 291 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 POLR2HP52434 150 aaKnown RBP8.28□□□□□ -1.08
HDAC3-215ENST00000519474 CRISP3P54108 245 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 OR2B6P58173 313 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 CSNK2A1P68400 391 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-215ENST00000519474 ADAM8P78325 824 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 HPCAP84074 193 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 GNA13Q14344 377 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 ACKR1Q16570 336 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 RPS26P11Q5JNZ5 115 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-215ENST00000519474 DLEU7Q6UYE1 221 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 ZNF836Q6ZNA1 936 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 TGIF2LYQ8IUE0 185 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 ZNF440Q8IYI8 595 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 ZBTB8BQ8NAP8 495 aaPredicted RBP8.28□□□□□ -1.08
HDAC3-215ENST00000519474 DYDC1Q8WWB3 177 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 MAL2Q969L2 176 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 TMEM19Q96HH6 336 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 CGREF1Q99674 301 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 SPATA9Q9BWV2 254 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 POTEKPQ9BYX7 375 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 ACTR6Q9GZN1 396 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 BCL2L10Q9HD36 194 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 TMEM45AQ9NWC5 275 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 THUMPD1Q9NXG2 353 aaKnown RBP8.28□□□□□ -1.08
HDAC3-215ENST00000519474 VAPAQ9P0L0 249 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 TMEM181Q9P2C4 612 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 P2RX2Q9UBL9 471 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 IFT52Q9Y366 437 aa8.28□□□□□ -1.08
HDAC3-215ENST00000519474 LRBAP50851 2863 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 TRBV5-3A0A0A0MS03 114 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.27□□□□□ -1.09
HDAC3-215ENST00000519474 A0A1W2PP18 115 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 EDF1O60869 148 aaKnown RBP8.27□□□□□ -1.09
HDAC3-215ENST00000519474 THBS1P07996 1170 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 CD99P14209 185 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 GPX2P18283 190 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 NCF2P19878 526 aaPredicted RBP8.27□□□□□ -1.09
HDAC3-215ENST00000519474 MAP2K6P52564 334 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 BLVRAP53004 296 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 STX1BP61266 288 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 BNIP2Q12982 314 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 FADDQ13158 208 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 ITGADQ13349 1161 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 LARS2Q15031 903 aaKnown RBP8.27□□□□□ -1.09
HDAC3-215ENST00000519474 P2RY6Q15077 328 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 RUNDC3AQ59EK9 446 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 ZNF311Q5JNZ3 666 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 PRAMEF8Q5VWM4 474 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 PRAMEF7Q5VXH5 474 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 Q6ZT83 130 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.27□□□□□ -1.09
HDAC3-215ENST00000519474 NANOGNBQ7Z5D8 188 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 GALNT5Q7Z7M9 940 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 WFDC8Q8IUA0 241 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 STEAP2Q8NFT2 490 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 STON2Q8WXE9 905 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 S100PBPQ96BU1 408 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 PLPPR2Q96GM1 343 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 ALPK1Q96QP1 1244 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 RAD21L1Q9H4I0 556 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 A4GALTQ9NPC4 353 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 FANCFQ9NPI8 374 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 GTF2A1LQ9UNN4 478 aa8.27□□□□□ -1.09
HDAC3-215ENST00000519474 ZNF443Q9Y2A4 671 aaPredicted RBP8.27□□□□□ -1.09
HDAC3-215ENST00000519474 SPIN1Q9Y657 262 aaPredicted RBP8.27□□□□□ -1.09
HDAC3-215ENST00000519474 NR5A2O00482 541 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 DNPH1O43598 174 aa8.26□□□□□ -1.09
HDAC3-215ENST00000519474 TPST1O60507 370 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms