RNA–Protein interactions for RNA: ENST00000504203.5

MATR3-233, Transcript of matrin 3, human

TSL 2 BASIC

Gene MATR3, Length 2,243 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-233	ENST00000504203	FAM25C	B3EWG5	89 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	FAM25G	B3EWG6	89 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	IL33	O95760	270 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	PPIC	P45877	212 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	SKP2	Q13309	424 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	SMAD4	Q13485	552 aa	Known RBP	11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	TDG	Q13569	410 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	CDK5R1	Q15078	307 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	PON3	Q15166	354 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	DEFB133	Q30KQ1	61 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	GXYLT1	Q4G148	440 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	ATG4D	Q86TL0	474 aa	Predicted RBP	11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	ENKUR	Q8TC29	256 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	LIPH	Q8WWY8	451 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	FRMD6	Q96NE9	622 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	NMNAT3	Q96T66	252 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	EXTL2	Q9UBQ6	330 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	RASD1	Q9Y272	281 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	CLCA3P	Q9Y6N3	262 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	IGKV3D-11	A0A0A0MRZ8	115 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203		A0A0G2JMP0	313 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203		A0A0X1KG70	313 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	IMPA2	O14732	288 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	MAGEB4	O15481	346 aa	Predicted RBP	11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	IDH3B	O43837	385 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	RPL4	P36578	427 aa	Known RBP	11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	PRPS1	P60891	318 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	ACTA2	P62736	377 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	ACTG2	P63267	376 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	IFITM2	Q01629	132 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	KCNAB1	Q14722	419 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	BCL2A1	Q16548	175 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	C14orf28	Q4W4Y0	310 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	SLC35D3	Q5M8T2	416 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	NKAIN2	Q5VXU1	208 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	WBP2NL	Q6ICG8	309 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	CBLN3	Q6UW01	205 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	APOOL	Q6UXV4	268 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	SLC35F2	Q8IXU6	374 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	GATS	Q8NAP1	163 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	CADM4	Q8NFZ8	388 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	OR4M2	Q8NGB6	313 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	OR13C5	Q8NGS8	318 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	ZPLD1	Q8TCW7	415 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	SLC7A6	Q92536	515 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	SMIM19	Q96E16	107 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	TTTY10	Q9BZA0	68 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	NXF5	Q9H1B4	397 aa	Known RBP	11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	EXOSC3	Q9NQT5	275 aa	Known RBP	11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	CUTC	Q9NTM9	273 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	ITGB1BP2	Q9UKP3	347 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	MMACHC	Q9Y4U1	282 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	SEC16A	O15027	2179 aa		11.92	□□□□□ -0.5
MATR3-233	ENST00000504203	TRAV1-2	A0A0B4J238	106 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	LYRM1	O43325	122 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	IGKV3-11	P04433	115 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	CD1A	P06126	327 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	EIF4E	P06730	217 aa	Known RBP	11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	SPI1	P17947	270 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	NPR2	P20594	1047 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	MST1	P26927	711 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	NAA10	P41227	235 aa	Predicted RBP	11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	EPHA4	P54764	986 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	SIRPA	P78324	504 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	LGALS3BP	Q08380	585 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	SF3A2	Q15428	464 aa	Known RBP	11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	TBRG1	Q3YBR2	411 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	IL20RB	Q6UXL0	311 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	PRR23C	Q6ZRP0	262 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	SLITRK4	Q8IW52	837 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	ZNF524	Q96C55	264 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	RASD2	Q96D21	266 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	ZDHHC12	Q96GR4	267 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	SLC46A1	Q96NT5	459 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	11.91	□□□□□ -0.5	5e-8	■■■□□ 15.4
MATR3-233	ENST00000504203	PCED1A	Q9H1Q7	454 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	KLHL1	Q9NR64	748 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	COPS3	Q9UNS2	423 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	HIF3A	Q9Y2N7	669 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	EML5	Q05BV3	1969 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203		A0A1W2PRG6	482 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	ELOA3D	A6NLF2	546 aa	Predicted RBP	11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	PRKAR1A	P10644	381 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	PNMT	P11086	282 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	UBL4A	P11441	157 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	IGFBP4	P22692	258 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	NXPH1	P58417	271 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	HNRNPK	P61978	463 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	RPS11	P62280	158 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	ERVK-25	P63136	954 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	IL10RA	Q13651	578 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	QPRT	Q15274	297 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	ZNF74	Q16587	644 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	SLC25A35	Q3KQZ1	300 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	ELOA3B	Q3SY89	546 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	LINC01590	Q5TEZ4	76 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	MZT2B	Q6NZ67	158 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	PLET1	Q6UQ28	207 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	TTLL10	Q6ZVT0	673 aa		11.91	□□□□□ -0.5
MATR3-233	ENST00000504203	TMEM151B	Q8IW70	566 aa		11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms