RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TGFBIQ15582 683 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 NRF1Q16656 503 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 HSP90AA5PQ58FG0 334 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 XKR6Q5GH73 641 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 TOR1AIP1Q5JTV8 583 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 KHDRBS2Q5VWX1 349 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 STEAP4Q687X5 459 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 OR52E8Q6IFG1 317 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 FAM166AQ6J272 317 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 MED27Q6P2C8 311 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 UGT2A3Q6UWM9 527 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 PLXDC2Q6UX71 529 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 MBOAT1Q6ZNC8 495 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 Q6ZTC4 211 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 SH2D5Q6ZV89 423 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 H1FNTQ75WM6 255 aaPredicted RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 CHMP1BQ7LBR1 199 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 TMPRSS11BQ86T26 416 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 LUZP2Q86TE4 346 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 NUDT13Q86X67 352 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 DENND6AQ8IWF6 608 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 ZNF611Q8N823 705 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 ACOT4Q8N9L9 421 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 PPFIBP2Q8ND30 876 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 OR5T3Q8NGG3 340 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 OR6Y1Q8NGX8 325 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 FAM216AQ8WUB2 273 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 UBTD2Q8WUN7 234 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 ZFAND2BQ8WV99 257 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 TMED6Q8WW62 240 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 C1orf54Q8WWF1 131 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 MRPL24Q96A35 216 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 MAGOHBQ96A72 148 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 TMCO6Q96DC7 493 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 TXNDC15Q96J42 360 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 KRT12Q99456 494 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 RHNO1Q9BSD3 238 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 RBM24Q9BX46 236 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 MS4A8Q9BY19 250 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 OR8D2Q9GZM6 311 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 WWTR1Q9GZV5 400 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 IQCGQ9H095 443 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 RHOJQ9H4E5 214 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 SDHAF3Q9NRP4 125 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 FAIMQ9NVQ4 179 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 THAP1Q9NVV9 213 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 MED29Q9NX70 200 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 KLHL28Q9NXS3 571 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 TXNDC16Q9P2K2 825 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 CTNNAL1Q9UBT7 734 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 MRTO4Q9UKD2 239 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 ABCG2Q9UNQ0 655 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 RUVBL2Q9Y230 463 aaKnown RBP3.45□□□□□ -1.86
USP54-217ENST00000498213 SLC22A14Q9Y267 594 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 STK38LQ9Y2H1 464 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 ACOT9Q9Y305 439 aa3.45□□□□□ -1.86
USP54-217ENST00000498213 UBR4Q5T4S7 5183 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 MED12Q93074 2177 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 A0A0A0MQY5 61 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 C1orf226A1L170 272 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 FRG2CA6NGY1 282 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 ZNF860A6NHJ4 632 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 IFITM10A6NMD0 228 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 E7ESA3 106 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 CCDC188H7C350 402 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 PGRMC1O00264 195 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 WWP2O00308 870 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 SSX4O60224 188 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 OR10H2O60403 315 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 CCL3P10147 92 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 HSD3B1P14060 373 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 STMN1P16949 149 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 ZNF708P17019 499 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 ZNF17P17021 662 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 DDX5P17844 614 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 TCP1P17987 556 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 CSNK2A2P19784 350 aaPredicted RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 CD22P20273 847 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 SAT1P21673 171 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 FKBP2P26885 142 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 GDF1P27539 372 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 PTPN6P29350 595 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 CRABP2P29373 138 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 HNRNPH1P31943 449 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 CASP3P42574 277 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 PPICP45877 212 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 GPR12P47775 334 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 PLA2G16P53816 162 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 CDKN2DP55273 166 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 DSCR4P56555 118 aaPredicted RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 ARL4CP56559 192 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 SEC61A1P61619 476 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 RPS4XP62701 263 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 CRADDP78560 199 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 IRF8Q02556 426 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 ASPHQ12797 758 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 SCGB2A2Q13296 93 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 SNX1Q13596 522 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 ZKSCAN8Q15776 578 aaPredicted RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 RNASEH2BQ5TBB1 312 aaKnown RBP3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms