RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 TAPBPLQ9BX59 468 aa10.67□□□□□ -0.7
CUX1-210ENST00000497815 PRRG4Q9BZD6 226 aa10.67□□□□□ -0.7
CUX1-210ENST00000497815 DENND2DQ9H6A0 471 aaPredicted RBP10.67□□□□□ -0.7
CUX1-210ENST00000497815 TIGARQ9NQ88 270 aa10.67□□□□□ -0.7
CUX1-210ENST00000497815 CCM2LQ9NUG4 571 aaPredicted RBP10.67□□□□□ -0.7
CUX1-210ENST00000497815 HDGFL3Q9Y3E1 203 aa10.67□□□□□ -0.7
CUX1-210ENST00000497815 FAM215AQ9Y5M1 114 aa10.67□□□□□ -0.7
CUX1-210ENST00000497815 SHANK1Q9Y566 2161 aa10.67□□□□□ -0.7
CUX1-210ENST00000497815 SPTA1P02549 2419 aa10.67□□□□□ -0.7
CUX1-210ENST00000497815 CHD6Q8TD26 2715 aa10.67□□□□□ -0.7
CUX1-210ENST00000497815 TRAV36DV7A0A075B6V5 113 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 TRBV4-1A0A0J9YWV2 114 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 LIPT2A6NK58 231 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 SLC22A20A6NK97 555 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 LRRN3E7EW58 273 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 GNGT2O14610 69 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 LRRTM2O43300 516 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 NPIPB7O75200 414 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 TIPRLO75663 272 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 PMS2P2O95744 297 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 TGM6O95932 706 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 CST1P01037 141 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 STSP08842 583 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 PLA2G2AP14555 144 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 ENPP1P22413 925 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 PTGER4P35408 488 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 RBM34P42696 430 aaKnown RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 CSNK2A1P68400 391 aaPredicted RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 PMPCAQ10713 525 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 PPP1R8Q12972 351 aaKnown RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 SF3B4Q15427 424 aaKnown RBP eCLIP10.66□□□□□ -0.7
CUX1-210ENST00000497815 ZNF239Q16600 458 aaKnown RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 PODNL1Q6PEZ8 512 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 B3GNT6Q6ZMB0 384 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 MEX3DQ86XN8 651 aaKnown RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 FNDC9Q8TBE3 224 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 PYDC1Q8WXC3 89 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 CPNE4Q96A23 557 aaPredicted RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 HS6ST2Q96MM7 605 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 UCN2Q96RP3 112 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 EPYCQ99645 322 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 ZNF426Q9BUY5 554 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 PTDSS2Q9BVG9 487 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 POTEKPQ9BYX7 375 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 YY1AP1Q9H869 796 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 MEPEQ9NQ76 525 aaPredicted RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 PAQR5Q9NXK6 330 aaPredicted RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 C6orf203Q9P0P8 240 aaPredicted RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 MCTS1Q9ULC4 181 aaKnown RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 MED31Q9Y3C7 131 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 U3KQV3 271 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 SMG1Q96Q15 3661 aaKnown RBP10.66□□□□□ -0.7
CUX1-210ENST00000497815 FREM3P0C091 2139 aa10.66□□□□□ -0.7
CUX1-210ENST00000497815 CFAP46Q8IYW2 2715 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 A0A087WUU8 490 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 A0A1W2PRQ8 180 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 ENO4A6NNW6 628 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 E9PLN8 166 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 ENTPD5O75356 428 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 AQP8O94778 261 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 AKR7A3O95154 331 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 CH25HO95992 272 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 HOXD4P09016 255 aaPredicted RBP10.65□□□□□ -0.7
CUX1-210ENST00000497815 GLI4P10075 376 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 IFI30P13284 250 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 GTF2E2P29084 291 aaKnown RBP10.65□□□□□ -0.7
CUX1-210ENST00000497815 SMIM11AP58511 58 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 RAC3P60763 192 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 SLC35A1P78382 337 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 DGCR6Q14129 220 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 SEC23BQ15437 767 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 EXOC3L2Q2M3D2 409 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 FAM69AQ5T7M9 428 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 NSUN5P2Q63ZY6 315 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 OR2T5Q6IEZ7 315 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 C5orf46Q6UWT4 87 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 SEM1Q6ZVN7 128 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 RRM2BQ7LG56 351 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 NRMQ8IXM6 262 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 MARVELD2Q8N4S9 558 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 C9orf106Q8NAJ2 232 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 PAPD5Q8NDF8 572 aaKnown RBP10.65□□□□□ -0.7
CUX1-210ENST00000497815 OR2T29Q8NH02 315 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 MFSD8Q8NHS3 518 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 SLC7A13Q8TCU3 470 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 ACOT11Q8WXI4 607 aaPredicted RBP10.65□□□□□ -0.7
CUX1-210ENST00000497815 ZHX1-C8orf76Q96EF9 292 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 MOGAT1Q96PD6 335 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 ALPK1Q96QP1 1244 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 VKORC1Q9BQB6 163 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 TTYH2Q9BSA4 534 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 SLC19A3Q9BZV2 496 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 KLHL4Q9C0H6 718 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 ANKRD19PQ9H560 264 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 REEP1Q9H902 201 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 C20orf141Q9NUB4 165 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 VNN3Q9NY84 501 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 CLCF1Q9UBD9 225 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 SEC14L4Q9UDX3 406 aa10.65□□□□□ -0.7
CUX1-210ENST00000497815 TMCC3Q9ULS5 477 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms