RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 NPSR1Q6W5P4 371 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 OR2T27Q8NH04 317 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 SMIM19Q96E16 107 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 SGTBQ96EQ0 304 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 LMF2Q9BU23 707 aaKnown RBP16.48■□□□□ 0.23
VIM-206ENST00000487938 DPAGT1Q9H3H5 408 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 COPS3Q9UNS2 423 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 TRAV1-2A0A0B4J238 106 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 NOTOA8MTQ0 251 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 FLRT2O43155 660 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 TSC22D2O75157 780 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 SERPINA3P01011 423 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 TCRBP04435 133 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 SYPP08247 313 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 MAGEB1P43366 347 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 UBE2IP63279 158 aaKnown RBP16.47■□□□□ 0.23
VIM-206ENST00000487938 BTG2P78543 158 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 TAF8Q7Z7C8 310 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 HOXB13Q92826 284 aaPredicted RBP16.47■□□□□ 0.23
VIM-206ENST00000487938 POT1Q9NUX5 634 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 ZNF222Q9UK12 451 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 ICAM5Q9UMF0 924 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 ANKRD34CP0C6C1 535 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 GRPRP30550 384 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 PGDP52209 483 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 DLX2Q07687 328 aaPredicted RBP16.47■□□□□ 0.23
VIM-206ENST00000487938 PON3Q15166 354 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 OR11H7Q8NGC8 314 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 OR6K6Q8NGW6 343 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 OR4C3Q8NH37 302 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 RPLP0P6Q8NHW5 317 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 GPBAR1Q8TDU6 330 aa16.47■□□□□ 0.23
VIM-206ENST00000487938 MRPL38Q96DV4 380 aaKnown RBP16.47■□□□□ 0.23
VIM-206ENST00000487938 MKKSQ9NPJ1 570 aaPredicted RBP16.47■□□□□ 0.23
VIM-206ENST00000487938 TEX13CA0A0J9YWL9 993 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 OR6C68A6NDL8 312 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 C4orf47A7E2U8 309 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 YPEL5P62699 121 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 ERVK-25P63136 954 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 FGFBP1Q14512 234 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 ZNF550Q7Z398 422 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 AVL9Q8NBF6 648 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 RASD2Q96D21 266 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 VSTM2LQ96N03 204 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 IRF2BPLQ9H1B7 796 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 GHITMQ9H3K2 345 aa16.46■□□□□ 0.23
VIM-206ENST00000487938 TDRD6O60522 2096 aaKnown RBP16.46■□□□□ 0.23
VIM-206ENST00000487938 TCRBV21S2A2A0A5A6 115 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 CSTAP01040 98 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 MT-ND4P03905 459 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 MMP15P51511 669 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 GNG2P59768 71 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 ACTA2P62736 377 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 ACTG2P63267 376 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 CDONQ4KMG0 1287 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 CCDC58Q4VC31 144 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 OOSP2Q86WS3 158 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 TIGD4Q8IY51 512 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 NPEPL1Q8NDH3 523 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 ZNF671Q8TAW3 534 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 SCMH1Q96GD3 660 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 CITED4Q96RK1 184 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 GPR174Q9BXC1 333 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 CACNG6Q9BXT2 260 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 MRPL15Q9P015 296 aaKnown RBP16.45■□□□□ 0.22
VIM-206ENST00000487938 NCDNQ9UBB6 729 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 TEKT2Q9UIF3 430 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 ZNF346Q9UL40 294 aaKnown RBP16.45■□□□□ 0.22
VIM-206ENST00000487938 A0A1B0GVT2 93 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 OR5K3A6NET4 321 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 ARL6IP5O75915 188 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 UBL3O95164 117 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 UCHL1P09936 223 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 DIO1P49895 249 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 GATSQ8NAP1 163 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 BEST4Q8NFU0 473 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 MS4A3Q96HJ5 214 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 HYLS1Q96M11 299 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 HSPA12BQ96MM6 686 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 DERL3Q96Q80 235 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 BEX1Q9HBH7 125 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 ABRACLQ9P1F3 81 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 SLC23A1Q9UHI7 598 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 HEATR5AQ86XA9 2040 aa16.45■□□□□ 0.22
VIM-206ENST00000487938 ADRB1P08588 477 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 CXCL3P19876 107 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 STOMP27105 288 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 HHEXQ03014 270 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 ZNF141Q15928 474 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 HSD17B12Q53GQ0 312 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 HES5Q5TA89 166 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 ARMC6Q6NXE6 501 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 RPL22L1Q6P5R6 122 aaKnown RBP16.44■□□□□ 0.22
VIM-206ENST00000487938 MCATQ8IVS2 390 aaKnown RBP16.44■□□□□ 0.22
VIM-206ENST00000487938 SYS1Q8N2H4 156 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 METTL27Q8N6F8 245 aaPredicted RBP16.44■□□□□ 0.22
VIM-206ENST00000487938 POMGNT2Q8NAT1 580 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 OR51Q1Q8NH59 317 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 OR14A16Q8NHC5 309 aa16.44■□□□□ 0.22
VIM-206ENST00000487938 LGALS14Q8TCE9 139 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms