RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TMEM229AB2RXF0 380 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 ZNF814B7Z6K7 855 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 GSTA4O15217 222 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 TPST2O60704 377 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 FAM107AO95990 144 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 C8BP07358 591 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 YES1P07947 543 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 POU2F1P14859 743 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 PTNP21246 168 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 FPR1P21462 350 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 KIR2DL3P43628 341 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 FAM27E3Q08E93 113 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 CEACAM7Q14002 265 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 OR1Q1Q15612 314 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 NPTX1Q15818 432 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 C1orf140Q5VVS0 124 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 ABLIM2Q6H8Q1 611 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 C8orf82Q6P1X6 216 aaPredicted RBP13.14□□□□□ -0.31
USP4-212ENST00000486549 RBM45Q8IUH3 476 aaKnown RBP13.14□□□□□ -0.31
USP4-212ENST00000486549 CCDC103Q8IW40 242 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 ZNF295-AS1Q8N0V1 137 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 LSMEM1Q8N8F7 131 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 OR4D11Q8NGI4 311 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 OR6T1Q8NGN1 323 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 LINC01560Q8TB33 94 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 DNAJA4Q8WW22 397 aaPredicted RBP13.14□□□□□ -0.31
USP4-212ENST00000486549 RASSF5Q8WWW0 418 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 PROX1Q92786 737 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 MCHR1Q99705 422 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 TAPBPLQ9BX59 468 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 POTEKPQ9BYX7 375 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 ALG2Q9H553 416 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 EVA1AQ9H8M9 152 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 ARL8BQ9NVJ2 186 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 ADPRHL2Q9NX46 363 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 CRIM1Q9NZV1 1036 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 ADAM21Q9UKJ8 722 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 PRDM4Q9UKN5 801 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 TRAPPC4Q9Y296 219 aa13.14□□□□□ -0.31
USP4-212ENST00000486549 DCHS2Q6V1P9 2916 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 A0A0B4J2E0 115 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 A0A1B0GX12 115 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 TUBAL3A6NHL2 446 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 LIPT2A6NK58 231 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 CPSF4LA6NMK7 179 aaKnown RBP13.13□□□□□ -0.31
USP4-212ENST00000486549 DNPH1O43598 174 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 RAMP1O60894 148 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 SHOX2O60902 331 aaPredicted RBP13.13□□□□□ -0.31
USP4-212ENST00000486549 AHSA1O95433 338 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 IFNA14P01570 189 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 GPIP06744 558 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 TNFRSF1BP20333 461 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 CD79BP40259 229 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 RPS5P46782 204 aaKnown RBP13.13□□□□□ -0.31
USP4-212ENST00000486549 GSK3BP49841 420 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 SORDQ00796 357 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 TLE4Q04727 773 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 CYBRD1Q53TN4 286 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 ULK3Q6PHR2 472 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.13□□□□□ -0.31
USP4-212ENST00000486549 STK32CQ86UX6 486 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 P3H2Q8IVL5 708 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 ANKS4BQ8N8V4 417 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 CCDC197Q8NCU1 140 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 PIGXQ8TBF5 258 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 SLC25A36Q96CQ1 311 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 SLC47A1Q96FL8 570 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 KCTD14Q9BQ13 255 aaPredicted RBP13.13□□□□□ -0.31
USP4-212ENST00000486549 TACO1Q9BSH4 297 aaKnown RBP13.13□□□□□ -0.31
USP4-212ENST00000486549 NAA11Q9BSU3 229 aaPredicted RBP13.13□□□□□ -0.31
USP4-212ENST00000486549 PLSCR4Q9NRQ2 329 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 ADA2Q9NZK5 511 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 TAGLN3Q9UI15 199 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 ING1Q9UK53 422 aaPredicted RBP13.13□□□□□ -0.31
USP4-212ENST00000486549 BAG5Q9UL15 447 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 SLC9A8Q9Y2E8 581 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 SH3GLB1Q9Y371 365 aa13.13□□□□□ -0.31
USP4-212ENST00000486549 ZNF716A6NP11 495 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 CXCR6O00574 342 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 EIF1BO60739 113 aaKnown RBP13.12□□□□□ -0.31
USP4-212ENST00000486549 AKR7A3O95154 331 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 PNMTP11086 282 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 KDELR2P33947 212 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 MXRA7P84157 204 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 ENTPD8Q5MY95 495 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 OTUD3Q5T2D3 398 aaPredicted RBP13.12□□□□□ -0.31
USP4-212ENST00000486549 FAM91A1Q658Y4 838 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 C6orf89Q6UWU4 347 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 DEF8Q6ZN54 512 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 CARM1Q86X55 608 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 RNF148Q8N7C7 305 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 TMEM99Q8N816 258 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 STK35Q8TDR2 534 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 KTI12Q96EK9 354 aaPredicted RBP13.12□□□□□ -0.31
USP4-212ENST00000486549 TPD52L3Q96J77 140 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 KLHL4Q9C0H6 718 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 BCO1Q9HAY6 547 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 C12orf10Q9HB07 376 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 GP6Q9HCN6 339 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 SPAG4Q9NPE6 437 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms