RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 OR2B6P58173 313 aa11□□□□□ -0.65
SDC1-206ENST00000482879 LSM11P83369 360 aaKnown RBP eCLIP11□□□□□ -0.65
SDC1-206ENST00000482879 MYBPHQ13203 477 aa11□□□□□ -0.65
SDC1-206ENST00000482879 GK3PQ14409 553 aa11□□□□□ -0.65
SDC1-206ENST00000482879 LAPTM4AQ15012 233 aa11□□□□□ -0.65
SDC1-206ENST00000482879 C3AR1Q16581 482 aa11□□□□□ -0.65
SDC1-206ENST00000482879 MICAQ29983 383 aa11□□□□□ -0.65
SDC1-206ENST00000482879 CTU2Q2VPK5 515 aaKnown RBP11□□□□□ -0.65
SDC1-206ENST00000482879 WLSQ5T9L3 541 aa11□□□□□ -0.65
SDC1-206ENST00000482879 HBMQ6B0K9 141 aa11□□□□□ -0.65
SDC1-206ENST00000482879 TMPPEQ6ZT21 453 aa11□□□□□ -0.65
SDC1-206ENST00000482879 CHMP1BQ7LBR1 199 aa11□□□□□ -0.65
SDC1-206ENST00000482879 PRICKLE2Q7Z3G6 844 aa11□□□□□ -0.65
SDC1-206ENST00000482879 FGD2Q7Z6J4 655 aa11□□□□□ -0.65
SDC1-206ENST00000482879 CHERPQ8IWX8 916 aaKnown RBP11□□□□□ -0.65
SDC1-206ENST00000482879 CDK20Q8IZL9 346 aa11□□□□□ -0.65
SDC1-206ENST00000482879 ICA1LQ8NDH6 482 aa11□□□□□ -0.65
SDC1-206ENST00000482879 OR5M9Q8NGP3 310 aa11□□□□□ -0.65
SDC1-206ENST00000482879 OR2V1Q8NHB1 315 aa11□□□□□ -0.65
SDC1-206ENST00000482879 OR5K1Q8NHB7 308 aa11□□□□□ -0.65
SDC1-206ENST00000482879 PIGXQ8TBF5 258 aa11□□□□□ -0.65
SDC1-206ENST00000482879 GIPC3Q8TF64 312 aa11□□□□□ -0.65
SDC1-206ENST00000482879 OSTF1Q92882 214 aa11□□□□□ -0.65
SDC1-206ENST00000482879 TAAR8Q969N4 342 aa11□□□□□ -0.65
SDC1-206ENST00000482879 SLC25A36Q96CQ1 311 aa11□□□□□ -0.65
SDC1-206ENST00000482879 SGTBQ96EQ0 304 aa11□□□□□ -0.65
SDC1-206ENST00000482879 DCLRE1BQ9H816 532 aa11□□□□□ -0.65
SDC1-206ENST00000482879 MEPEQ9NQ76 525 aaPredicted RBP11□□□□□ -0.65
SDC1-206ENST00000482879 ALKBH4Q9NXW9 302 aa11□□□□□ -0.65
SDC1-206ENST00000482879 PDP1Q9P0J1 537 aaPredicted RBP11□□□□□ -0.65
SDC1-206ENST00000482879 TRAPPC4Q9Y296 219 aa11□□□□□ -0.65
SDC1-206ENST00000482879 FAM208BQ5VWN6 2430 aa11□□□□□ -0.65
SDC1-206ENST00000482879 ESPL1Q14674 2120 aa11□□□□□ -0.65
SDC1-206ENST00000482879 MED12LQ86YW9 2145 aa11□□□□□ -0.65
SDC1-206ENST00000482879 POLEQ07864 2286 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 SAC3D1A6NKF1 404 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 ENO4A6NNW6 628 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 BCKDKO14874 412 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 OR2T1O43869 369 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 CXCL13O43927 109 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 PMS2P2O95744 297 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 CH25HO95992 272 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 PRB1P04280 392 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 IMPDH2P12268 514 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 ABOP16442 354 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 ZNF23P17027 643 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 CBLP22681 906 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 IFNGR2P38484 337 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 EIF1AXP47813 144 aaKnown RBP10.99□□□□□ -0.65
SDC1-206ENST00000482879 DIO1P49895 249 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 CARD18P57730 90 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 RPS3AP61247 264 aaKnown RBP10.99□□□□□ -0.65
SDC1-206ENST00000482879 PRKCDQ05655 676 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 LTBQ06643 244 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 C19orf57Q0VDD7 668 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 OR7A5Q15622 319 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 SGCBQ16585 318 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 GXYLT1Q4G148 440 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 FAM69AQ5T7M9 428 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 SHQ1Q6PI26 577 aaKnown RBP10.99□□□□□ -0.65
SDC1-206ENST00000482879 MEX3DQ86XN8 651 aaKnown RBP10.99□□□□□ -0.65
SDC1-206ENST00000482879 PM20D2Q8IYS1 436 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 LINC00471Q8N535 108 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 OR10G2Q8NGC3 310 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 OR6S1Q8NH40 331 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 OR10D3Q8NH80 312 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 MFSD8Q8NHS3 518 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 MIB2Q96AX9 1013 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 BPIFA2Q96DR5 249 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 NRBF2Q96F24 287 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 ADGRG7Q96K78 797 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 PTDSS2Q9BVG9 487 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 TAPBPLQ9BX59 468 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 PRDM14Q9GZV8 571 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 COQ10BQ9H8M1 238 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 KRCC1Q9NPI7 259 aaPredicted RBP10.99□□□□□ -0.65
SDC1-206ENST00000482879 TIGARQ9NQ88 270 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 C20orf141Q9NUB4 165 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 C6orf203Q9P0P8 240 aaPredicted RBP10.99□□□□□ -0.65
SDC1-206ENST00000482879 MYO7BQ6PIF6 2116 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 ALPK2Q86TB3 2170 aa10.99□□□□□ -0.65
SDC1-206ENST00000482879 HTR3EA5X5Y0 456 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 LIPT2A6NK58 231 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 EIF4E1BA6NMX2 242 aaKnown RBP10.98□□□□□ -0.65
SDC1-206ENST00000482879 LRRN3E7EW58 273 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 G3V2T6 193 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 MGRN1O60291 552 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 IGF2P01344 180 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 BGLAPP02818 100 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 TPOP07202 933 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 FUT1P19526 365 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 MAKP20794 623 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 PRKACGP22612 351 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 GPR4P46093 362 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 OMPP47874 163 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 CTBP2P56545 445 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 RAC3P60763 192 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 CSNK2A1P68400 391 aaPredicted RBP10.98□□□□□ -0.65
SDC1-206ENST00000482879 SLC35A1P78382 337 aa10.98□□□□□ -0.65
SDC1-206ENST00000482879 RBPJQ06330 500 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms