RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 IL13RA1P78552 427 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 RHOUQ7L0Q8 258 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 TPRA1Q86W33 373 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 OR6V1Q8N148 313 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 CRB3Q9BUF7 120 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 HCAR1Q9BXC0 346 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 SLC6A20Q9NP91 592 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 DHDHQ9UQ10 334 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 TRIOBPQ9H2D6 2365 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 PCNTO95613 3336 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 AGAP14A8MT82 685 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 FOXE1O00358 373 aaPredicted RBP12.54□□□□□ -0.4
USP42-206ENST00000479544 FFAR1O14842 300 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 MPP7Q5T2T1 576 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 ERN2Q76MJ5 926 aaKnown RBP12.54□□□□□ -0.4
USP42-206ENST00000479544 SIRT6Q8N6T7 355 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 PXT1Q8NFP0 134 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 OR5M1Q8NGP8 315 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 KCNE3Q9Y6H6 103 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 ATAD5Q96QE3 1844 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 ZNF736B4DX44 427 aaPredicted RBP12.54□□□□□ -0.4
USP42-206ENST00000479544 SLC33A1O00400 549 aaPredicted RBP12.54□□□□□ -0.4
USP42-206ENST00000479544 HCRTR2O43614 444 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 FGF18O76093 207 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 WISP3O95389 354 aaPredicted RBP12.54□□□□□ -0.4
USP42-206ENST00000479544 WNT1P04628 370 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 ZNF888P0CJ79 500 aaPredicted RBP12.54□□□□□ -0.4
USP42-206ENST00000479544 ZNF28P17035 718 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 SPOCK1Q08629 439 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 ILF3Q12906 894 aaKnown RBP eCLIP12.54□□□□□ -0.4
USP42-206ENST00000479544 NFATC4Q14934 902 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 RAB11BQ15907 218 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 CMTM4Q8IZR5 234 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 CNTNAP3BQ96NU0 1288 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 NIT2Q9NQR4 276 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 CAMK2AQ9UQM7 478 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 RAB6AP20340 208 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 PRRT3Q5FWE3 981 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 NHLRC1Q6VVB1 395 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 ASPGQ86U10 573 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 C9orf62Q8N4C0 152 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 OR52N1Q8NH53 320 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 ARL11Q969Q4 196 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 ZBTB8AQ96BR9 441 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 DPYSL5Q9BPU6 564 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 EPHA6Q9UF33 1036 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 RBM7Q9Y580 266 aaKnown RBP12.54□□□□□ -0.4
USP42-206ENST00000479544 SCN3AQ9NY46 2000 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 LRRC37AA6NMS7 1700 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 WRBO00258 174 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 NFATC1O95644 943 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 ITGA5P08648 1049 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 RAE1P78406 368 aaKnown RBP12.53□□□□□ -0.4
USP42-206ENST00000479544 FBXL6Q8N531 539 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 ACBD4Q8NC06 268 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 WDFY2Q96P53 400 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 CASD1Q96PB1 797 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 ZNF649Q9BS31 505 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 TAPBPLQ9BX59 468 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 KLHL42Q9P2K6 505 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 ADAM18Q9Y3Q7 739 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 NAP1L6A6NFF2 107 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 E9PI62 339 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 CDK2AP1O14519 115 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 TGM5O43548 720 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 LGI1O95970 557 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 IGHA2P01877 340 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 HPXP02790 462 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 HCKP08631 526 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 SBK2P0C263 348 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 DGLUCYQ7Z3D6 616 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 ZNF683Q8IZ20 524 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 HAVCR2Q8TDQ0 301 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 CXorf58Q96LI9 332 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 SDHCQ99643 169 aaPredicted RBP12.53□□□□□ -0.4
USP42-206ENST00000479544 VRK1Q99986 396 aaPredicted RBP12.53□□□□□ -0.4
USP42-206ENST00000479544 MS4A8Q9BY19 250 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 ACKR4Q9NPB9 350 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 FBXL4Q9UKA2 621 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 ZNF443Q9Y2A4 671 aaPredicted RBP12.53□□□□□ -0.4
USP42-206ENST00000479544 FOCADQ5VW36 1801 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 FITM1A5D6W6 292 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 DVL2O14641 736 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 SELENOFO60613 162 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 ADAMTS4O75173 837 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 CBX7O95931 251 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 PVRP15151 417 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 ZNF20P17024 532 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 S1PR1P21453 382 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 ITGB8P26012 769 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 SLC6A9P48067 706 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 CSRP3P50461 194 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 PPT1P50897 306 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 GZMMP51124 257 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 TMEM150AQ86TG1 271 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 GLB1L2Q8IW92 636 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 BPIFB2Q8N4F0 458 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 CAMKVQ8NCB2 501 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 OR11H7Q8NGC8 314 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 NR4A3Q92570 626 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms