RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TBRG1Q3YBR2 411 aa14.89□□□□□ -0.03
VIM-204ENST00000478746 RNF165Q6ZSG1 346 aa14.89□□□□□ -0.03
VIM-204ENST00000478746 OLIG3Q7RTU3 272 aa14.89□□□□□ -0.03
VIM-204ENST00000478746 MNS1Q8NEH6 495 aa14.89□□□□□ -0.03
VIM-204ENST00000478746 PMM1Q92871 262 aa14.89□□□□□ -0.03
VIM-204ENST00000478746 TMEM45BQ96B21 275 aa14.89□□□□□ -0.03
VIM-204ENST00000478746 DDIT4LQ96D03 193 aa14.89□□□□□ -0.03
VIM-204ENST00000478746 AURKBQ96GD4 344 aaPredicted RBP14.89□□□□□ -0.03
VIM-204ENST00000478746 SLC35A3Q9Y2D2 325 aa14.89□□□□□ -0.03
VIM-204ENST00000478746 LYNX1G3V0Z9 82 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 PROCP04070 461 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 LYNX1P0DP58 116 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 IMPDH2P12268 514 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 NPR2P20594 1047 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 CALCRP30988 508 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 THBS4P35443 961 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 KHKP50053 298 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 ADRM1Q16186 407 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 MAPK14Q16539 360 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 C3orf36Q3SXR2 165 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 SHQ1Q6PI26 577 aaKnown RBP14.88□□□□□ -0.03
VIM-204ENST00000478746 SPATA21Q7Z572 469 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 SVOPLQ8N434 492 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 ZIC4Q8N9L1 334 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 FAM71CQ8NEG0 241 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 NUP37Q8NFH4 326 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 OR1K1Q8NGR3 316 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 COQ8BQ96D53 544 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 PRPF18Q99633 342 aaKnown RBP14.88□□□□□ -0.03
VIM-204ENST00000478746 RBM4Q9BWF3 364 aaKnown RBP14.88□□□□□ -0.03
VIM-204ENST00000478746 HIF1ANQ9NWT6 349 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 OXSMQ9NWU1 459 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 PCDHGB4Q9UN71 923 aa14.88□□□□□ -0.03
VIM-204ENST00000478746 TMED7-TICAM2A0A0A6YYA0 188 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 TMEM129A0AVI4 362 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 GLRA3O75311 464 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 BCAS1O75363 584 aaPredicted RBP14.87□□□□□ -0.03
VIM-204ENST00000478746 LGI1O95970 557 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 CECR9P0C854 216 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 MAPK1P28482 360 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 SOAT1P35610 550 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 HTR3AP46098 478 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 IDH2P48735 452 aaKnown RBP14.87□□□□□ -0.03
VIM-204ENST00000478746 HGFACQ04756 655 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 EMBQ6PCB8 327 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 PAQR6Q6TCH4 344 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 USP43Q70EL4 1123 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 C16orf62Q7Z3J2 963 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 C6orf120Q7Z4R8 191 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 DDIASQ8IXT1 998 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 ARFGAP2Q8N6H7 521 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 NOA1Q8NC60 698 aaKnown RBP14.87□□□□□ -0.03
VIM-204ENST00000478746 BCL2L2Q92843 193 aaPredicted RBP14.87□□□□□ -0.03
VIM-204ENST00000478746 TMEM186Q96B77 213 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 ANKRD27Q96NW4 1050 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 ZNF385AQ96PM9 386 aaKnown RBP14.87□□□□□ -0.03
VIM-204ENST00000478746 ZNF350Q9GZX5 532 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 ZNF442Q9H7R0 627 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 DYNLRB1Q9NP97 96 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 EXD2Q9NVH0 621 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 CRNNQ9UBG3 495 aaPredicted RBP14.87□□□□□ -0.03
VIM-204ENST00000478746 TMED7Q9Y3B3 224 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 GRIP1Q9Y3R0 1128 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 SPEF1Q9Y4P9 236 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 DNAJC15Q9Y5T4 150 aa14.87□□□□□ -0.03
VIM-204ENST00000478746 NR5A2O00482 541 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 ZNF208O43345 1280 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 ADRA2AP08913 450 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 CPA3P15088 417 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 HILS1P60008 231 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 TUBA1BP68363 451 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 TUBA4AP68366 448 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 HBA1P69905 142 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 IL1RL1Q01638 556 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 CCDC153Q494R4 210 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 PDLIM3Q53GG5 364 aaPredicted RBP14.86□□□□□ -0.03
VIM-204ENST00000478746 OTUD3Q5T2D3 398 aaPredicted RBP14.86□□□□□ -0.03
VIM-204ENST00000478746 THSD4Q6ZMP0 1018 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 TUBA1AQ71U36 451 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 TRMT10CQ7L0Y3 403 aaKnown RBP14.86□□□□□ -0.03
VIM-204ENST00000478746 TMEM99Q8N816 258 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 CCDC63Q8NA47 563 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 OR9K2Q8NGE7 335 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 JMJD8Q96S16 334 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 SF3B5Q9BWJ5 86 aaKnown RBP14.86□□□□□ -0.03
VIM-204ENST00000478746 SERHL2Q9H4I8 314 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 LPAR2Q9HBW0 351 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 PSMC3IPQ9P2W1 217 aaPredicted RBP14.86□□□□□ -0.03
VIM-204ENST00000478746 TBK1Q9UHD2 729 aa14.86□□□□□ -0.03
VIM-204ENST00000478746 ARPC4-TTLL3A0A0A6YYG9 625 aa14.85□□□□□ -0.03
VIM-204ENST00000478746 A0A1W2PPM1 405 aa14.85□□□□□ -0.03
VIM-204ENST00000478746 TMEM72A0PK05 275 aa14.85□□□□□ -0.03
VIM-204ENST00000478746 ZNF587BE7ETH6 402 aa14.85□□□□□ -0.03
VIM-204ENST00000478746 RIPK2O43353 540 aa14.85□□□□□ -0.03
VIM-204ENST00000478746 PLIN3O60664 434 aa14.85□□□□□ -0.03
VIM-204ENST00000478746 LYPLA1O75608 230 aaPredicted RBP14.85□□□□□ -0.03
VIM-204ENST00000478746 IGLV1-44P01699 117 aa14.85□□□□□ -0.03
VIM-204ENST00000478746 POLR2HP52434 150 aaKnown RBP14.85□□□□□ -0.03
VIM-204ENST00000478746 KCNJ10P78508 379 aa14.85□□□□□ -0.03
VIM-204ENST00000478746 PTGR1Q14914 329 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms