RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 OR10S1Q8NGN2 331 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 ADAMTS15Q8TE58 950 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 C1orf54Q8WWF1 131 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 CFHR4Q92496 578 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 TSPAN17Q96FV3 270 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 SIGLEC10Q96LC7 697 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 BAG1Q99933 345 aaPredicted RBP6.79□□□□□ -1.32
USP54-211ENST00000474929 MRPL1Q9BYD6 325 aaKnown RBP6.79□□□□□ -1.32
USP54-211ENST00000474929 IQCGQ9H095 443 aaKnown RBP6.79□□□□□ -1.32
USP54-211ENST00000474929 ANKRA2Q9H9E1 313 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 HINT3Q9NQE9 182 aaKnown RBP6.79□□□□□ -1.32
USP54-211ENST00000474929 MMP26Q9NRE1 261 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 SLCO1C1Q9NYB5 712 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 GRHL1Q9NZI5 618 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 FBXL3Q9UKT7 428 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 C19orf53Q9UNZ5 99 aaPredicted RBP6.79□□□□□ -1.32
USP54-211ENST00000474929 LRCH1Q9Y2L9 728 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 HDGFL3Q9Y3E1 203 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 FLVCR1Q9Y5Y0 555 aa6.79□□□□□ -1.32
USP54-211ENST00000474929 FAM95CA0A1B0GW59 222 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 TCRBV7S3A2A0A539 114 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 MYO1GB0I1T2 1018 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 SKAP2O75563 359 aaPredicted RBP6.78□□□□□ -1.32
USP54-211ENST00000474929 TGDSO95455 350 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 H6PDO95479 791 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 UQCRC2P22695 453 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 GABRA3P34903 492 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 TGFBR2P37173 567 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 MAGEA3P43357 314 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 GSTM5P46439 218 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 SERPINB4P48594 390 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 CLK1P49759 484 aaKnown RBP6.78□□□□□ -1.32
USP54-211ENST00000474929 SLC35A2P78381 396 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 CCL8P80075 99 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 ZNF117Q03924 483 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 NPRL3Q12980 569 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 CBFBQ13951 182 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 MSS51Q4VC12 460 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 TMEM155Q4W5P6 130 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 FRG2Q64ET8 278 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 USP51Q70EK9 711 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 ZBED8Q8IZ13 594 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 OR2L13Q8N349 312 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 L3MBTL4Q8NA19 623 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 ANKK1Q8NFD2 765 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 OR4C3Q8NH37 302 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 PHOSPHO1Q8TCT1 267 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 GPR151Q8TDV0 419 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 MAIP1Q8WWC4 291 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 TMEM234Q8WY98 164 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 ST8SIA1Q92185 356 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 DDB2Q92466 427 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 C16orf58Q96GQ5 468 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 NAA11Q9BSU3 229 aaPredicted RBP6.78□□□□□ -1.32
USP54-211ENST00000474929 TMEM165Q9HC07 324 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 SLC35C2Q9NQQ7 365 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 FBLN5Q9UBX5 448 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 GRID1Q9ULK0 1009 aa6.78□□□□□ -1.32
USP54-211ENST00000474929 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.78□□□□□ -1.32
USP54-211ENST00000474929 RNASEK-C17orf49H0YIS7 233 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 ANKRD28O15084 1053 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 MGRN1O60291 552 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 IFNW1P05000 195 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 NAT2P11245 290 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 NTSP30990 170 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 MAGEB1P43366 347 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 SEC24CP53992 1094 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 IFT88Q13099 833 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 MAD2L1BPQ15013 274 aaPredicted RBP6.77□□□□□ -1.33
USP54-211ENST00000474929 TTC19Q6DKK2 380 aaPredicted RBP6.77□□□□□ -1.33
USP54-211ENST00000474929 METTL2BQ6P1Q9 378 aaKnown RBP6.77□□□□□ -1.33
USP54-211ENST00000474929 VASH1Q7L8A9 365 aaPredicted RBP6.77□□□□□ -1.33
USP54-211ENST00000474929 RNF144BQ7Z419 303 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 NDUFA11Q86Y39 141 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 LDLRAD3Q86YD5 345 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 TEX9Q8N6V9 391 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 LRRC57Q8N9N7 239 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 CDRT4Q8N9R6 151 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 STAG3L4Q8TBR4 150 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 ANKRD49Q8WVL7 239 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 BCL2L2Q92843 193 aaPredicted RBP6.77□□□□□ -1.33
USP54-211ENST00000474929 EXT2Q93063 718 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 EXOSC8Q96B26 276 aaKnown RBP6.77□□□□□ -1.33
USP54-211ENST00000474929 TM4SF18Q96CE8 201 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 R3HDM4Q96D70 268 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 RCC1LQ96I51 464 aaKnown RBP6.77□□□□□ -1.33
USP54-211ENST00000474929 AMDHD1Q96NU7 426 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 FRG2BQ96QU4 278 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 DESI2Q9BSY9 194 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 SF3B5Q9BWJ5 86 aaKnown RBP6.77□□□□□ -1.33
USP54-211ENST00000474929 ACTRT3Q9BYD9 372 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 TRIM15Q9C019 465 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 NMUR2Q9GZQ4 415 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 HOXD1Q9GZZ0 328 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 LACRTQ9GZZ8 138 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 NANOGQ9H9S0 305 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 PATZ1Q9HBE1 687 aaKnown RBP6.77□□□□□ -1.33
USP54-211ENST00000474929 NSMCE4AQ9NXX6 385 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 SLC7A8Q9UHI5 535 aa6.77□□□□□ -1.33
USP54-211ENST00000474929 DUSP13Q9UII6 198 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms