RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 CORO2BQ9UQ03 480 aa15.86■□□□□ 0.13
UPF3A-203ENST00000474056 NDUFAF1Q9Y375 327 aa15.86■□□□□ 0.13
UPF3A-203ENST00000474056 FLVCR1Q9Y5Y0 555 aa15.86■□□□□ 0.13
UPF3A-203ENST00000474056 USF3Q68DE3 2245 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 LIPT2A6NK58 231 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 EVPLLA8MZ36 301 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 TMEM229AB2RXF0 380 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 GPR171O14626 319 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 EIF1BO60739 113 aaKnown RBP15.85■□□□□ 0.13
UPF3A-203ENST00000474056 COX5AP20674 150 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 ADSLP30566 484 aaPredicted RBP15.85■□□□□ 0.13
UPF3A-203ENST00000474056 PRKAR1BP31321 381 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 NR1H2P55055 460 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 SELPLGQ14242 412 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 OR7A5Q15622 319 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 ADRM1Q16186 407 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 GLIPR1L2Q4G1C9 344 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 PAQR6Q6TCH4 344 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 ZNF704Q6ZNC4 412 aaPredicted RBP15.85■□□□□ 0.13
UPF3A-203ENST00000474056 ATG4DQ86TL0 474 aaPredicted RBP15.85■□□□□ 0.13
UPF3A-203ENST00000474056 DPP10Q8N608 796 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 TMEM99Q8N816 258 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 SLC35B4Q969S0 331 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 APH1AQ96BI3 265 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 CGREF1Q99674 301 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 NAA11Q9BSU3 229 aaPredicted RBP15.85■□□□□ 0.13
UPF3A-203ENST00000474056 TMUB1Q9BVT8 246 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 BEX4Q9NWD9 120 aaPredicted RBP15.85■□□□□ 0.13
UPF3A-203ENST00000474056 PRDM4Q9UKN5 801 aa15.85■□□□□ 0.13
UPF3A-203ENST00000474056 A8MVM7 634 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 ANGPT2O15123 496 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 TPST1O60507 370 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 MRPL33O75394 65 aaKnown RBP15.84■□□□□ 0.13
UPF3A-203ENST00000474056 AKR7A3O95154 331 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 CNOT4O95628 575 aaKnown RBP15.84■□□□□ 0.13
UPF3A-203ENST00000474056 GPIP06744 558 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 SLC6A2P23975 617 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 AQP1P29972 269 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 ADAM8P78325 824 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 SF3A3Q12874 501 aaKnown RBP eCLIP15.84■□□□□ 0.134e-6■■■■□ 22.2
UPF3A-203ENST00000474056 SLC17A1Q14916 467 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 STK11Q15831 433 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 OTUD3Q5T2D3 398 aaPredicted RBP15.84■□□□□ 0.13
UPF3A-203ENST00000474056 FBXW9Q5XUX1 488 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 CGB2Q6NT52 195 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 DHRS4L2Q6PKH6 230 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 SEZ6L2Q6UXD5 910 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 UBE2J2Q8N2K1 259 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 ANKRD27Q96NW4 1050 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 CCL19Q99731 98 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 TMEM204Q9BSN7 226 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 FGFR1OP2Q9NVK5 253 aa15.84■□□□□ 0.13
UPF3A-203ENST00000474056 MAP1AP78559 2803 aaPredicted RBP15.84■□□□□ 0.13
UPF3A-203ENST00000474056 NPIPB7O75200 414 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 CD99P14209 185 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 FOXG1P55316 489 aaPredicted RBP15.83■□□□□ 0.12
UPF3A-203ENST00000474056 MTPNP58546 118 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 FOXD4Q12950 439 aaPredicted RBP15.83■□□□□ 0.12
UPF3A-203ENST00000474056 CAPRIN1Q14444 709 aaKnown RBP15.83■□□□□ 0.12
UPF3A-203ENST00000474056 C1orf140Q5VVS0 124 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 METTL21CQ5VZV1 264 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 CASP12Q6UXS9 341 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 C20orf204Q6ZNR8 217 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 KRT73Q86Y46 540 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 PTOV1Q86YD1 416 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 KRTAP1-3Q8IUG1 177 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 ZNF433Q8N7K0 673 aaPredicted RBP15.83■□□□□ 0.12
UPF3A-203ENST00000474056 HIPK4Q8NE63 616 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 WFDC11Q8NEX6 87 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 TSPEARQ8WU66 669 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 HSD17B8Q92506 261 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 SPATA5L1Q9BVQ7 753 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 TAPBPLQ9BX59 468 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 ADPRHL2Q9NX46 363 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 PLCE1Q9P212 2302 aa15.83■□□□□ 0.12
UPF3A-203ENST00000474056 FLNAP21333 2647 aaKnown RBP15.82■□□□□ 0.12
UPF3A-203ENST00000474056 AQP7P3A6NL99 342 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 RAD51DO75771 328 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 TROVE2P10155 538 aaKnown RBP eCLIP15.82■□□□□ 0.12
UPF3A-203ENST00000474056 HTR2AP28223 471 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 HOXC12P31275 282 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 P2RY4P51582 365 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 EGR4Q05215 589 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 DMTNQ08495 405 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 NFYCQ13952 458 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 NCMAPQ5T1S8 102 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 OR52E4Q8NGH9 312 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 STK35Q8TDR2 534 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 PIP5K1AQ99755 562 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 WFDC6Q9BQY6 131 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 PRR14Q9BWN1 585 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 RPS6KB2Q9UBS0 482 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 MALT1Q9UDY8 824 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 ANGPT4Q9Y264 503 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 SLC9A8Q9Y2E8 581 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 ALPK2Q86TB3 2170 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 C2CD3Q4AC94 2353 aa15.82■□□□□ 0.12
UPF3A-203ENST00000474056 FBP2O00757 339 aa15.81■□□□□ 0.12
UPF3A-203ENST00000474056 ITGA5P08648 1049 aa15.81■□□□□ 0.12
UPF3A-203ENST00000474056 GGT1P19440 569 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms