RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	HIPK4	Q8NE63	616 aa		10.23	□□□□□ -0.77
CPNE1-222	ENST00000473373	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	10.23	□□□□□ -0.77
CPNE1-222	ENST00000473373	OR52E4	Q8NGH9	312 aa		10.23	□□□□□ -0.77
CPNE1-222	ENST00000473373	SLC25A36	Q96CQ1	311 aa		10.23	□□□□□ -0.77
CPNE1-222	ENST00000473373	PLPPR2	Q96GM1	343 aa		10.23	□□□□□ -0.77
CPNE1-222	ENST00000473373	CGREF1	Q99674	301 aa		10.23	□□□□□ -0.77
CPNE1-222	ENST00000473373	CCL19	Q99731	98 aa		10.23	□□□□□ -0.77
CPNE1-222	ENST00000473373	ESRP2	Q9H6T0	727 aa	Known RBP	10.23	□□□□□ -0.77
CPNE1-222	ENST00000473373	BCL2L10	Q9HD36	194 aa		10.23	□□□□□ -0.77
CPNE1-222	ENST00000473373	TRAPPC4	Q9Y296	219 aa		10.23	□□□□□ -0.77
CPNE1-222	ENST00000473373	ZC3H12D	A2A288	527 aa	Known RBP	10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373		A8MVM7	634 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	SMPD2	O60906	423 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	RAD51D	O75771	328 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	AKR7A3	O95154	331 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	PRG2	P13727	222 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	GGT1	P19440	569 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	PRKAR1B	P31321	381 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	GUCY1A3	Q02108	690 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	FAP	Q12884	760 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	CYLC2	Q14093	348 aa	Predicted RBP	10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	P2RY6	Q15077	328 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	MAPK11	Q15759	364 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	DEFB113	Q30KQ7	82 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	METTL21C	Q5VZV1	264 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	AP1AR	Q63HQ0	302 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	ABLIM2	Q6H8Q1	611 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373		Q6ZT83	130 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	RANBP3L	Q86VV4	465 aa	Predicted RBP	10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	C10orf53	Q8N6V4	93 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	STON2	Q8WXE9	905 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	HSD17B8	Q92506	261 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	FOXC2	Q99958	501 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	USB1	Q9BQ65	265 aa	Known RBP	10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	ECSIT	Q9BQ95	431 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	TMUB1	Q9BVT8	246 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	POTEKP	Q9BYX7	375 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	OR10A4	Q9H209	315 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	PIF1	Q9H611	641 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	TMEM38A	Q9H6F2	299 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	TMEM27	Q9HBJ8	222 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	MED4	Q9NPJ6	270 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	PARPBP	Q9NWS1	579 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	ASB6	Q9NWX5	421 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	SLC9A8	Q9Y2E8	581 aa		10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	NIPBL	Q6KC79	2804 aa	eCLIP	10.22	□□□□□ -0.77
CPNE1-222	ENST00000473373	PRRC2A	P48634	2157 aa	Known RBP	10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	DEFB108A	A8MXU0	73 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	OPN1SW	P03999	348 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	CD3E	P07766	207 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	IMPDH2	P12268	514 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	BMP2	P12643	396 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	GPX2	P18283	190 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	ADSL	P30566	484 aa	Predicted RBP	10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	ACAA2	P42765	397 aa	Known RBP	10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	RPS5	P46782	204 aa	Known RBP	10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	PLAUR	Q03405	335 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	PDK3	Q15120	406 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	PPA1	Q15181	289 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	RUNDC3A	Q59EK9	446 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	ALG10B	Q5I7T1	473 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	INTS11	Q5TA45	600 aa	Known RBP	10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	C9orf135	Q5VTT2	229 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	C1orf140	Q5VVS0	124 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	FBXW9	Q5XUX1	488 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	PAQR6	Q6TCH4	344 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	KLHL24	Q6TFL4	600 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	ZNF704	Q6ZNC4	412 aa	Predicted RBP	10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	SLC30A8	Q8IWU4	369 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	MSRB3	Q8IXL7	192 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	GABRG1	Q8N1C3	465 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	SMYD1	Q8NB12	490 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	OR10A6	Q8NH74	314 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	TSPEAR	Q8WU66	669 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	PIGT	Q969N2	578 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	ANKRD27	Q96NW4	1050 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	ALPK1	Q96QP1	1244 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	SH3GL1	Q99961	368 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	CPPED1	Q9BRF8	314 aa	Predicted RBP	10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	TRIM2	Q9C040	744 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	ADAM19	Q9H013	955 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	PLEKHF2	Q9H8W4	249 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	TES	Q9UGI8	421 aa	Known RBP	10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	PRDM4	Q9UKN5	801 aa		10.21	□□□□□ -0.77
CPNE1-222	ENST00000473373	ARID1A	O14497	2285 aa		10.21	□□□□□ -0.78
CPNE1-222	ENST00000473373	MRAS	O14807	208 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	ARHGEF9	O43307	516 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	GCM2	O75603	506 aa	Predicted RBP	10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	ATE1	O95260	518 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	THBD	P07204	575 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	PNMT	P11086	282 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	NQO1	P15559	274 aa	Known RBP	10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	HOXB9	P17482	250 aa	Predicted RBP	10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	CDH2	P19022	906 aa	Predicted RBP	10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	CBL	P22681	906 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	RBBP4	Q09028	425 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	C1D	Q13901	141 aa	Known RBP	10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	TAB1	Q15750	504 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	ACKR1	Q16570	336 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	TRMT5	Q32P41	509 aa	Known RBP	10.2	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms