RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 MAL2Q969L2 176 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 FBXW5Q969U6 566 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 MUCL1Q96DR8 90 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 ADAM19Q9H013 955 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 LAMP3Q9UQV4 416 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 FBN3Q75N90 2809 aa13.87□□□□□ -0.19
CCDC88B-205ENST00000472524 ZANQ9Y493 2812 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 ALPK2Q86TB3 2170 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 CSPG4Q6UVK1 2322 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 A0A0G2JPF8 293 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 CIB4A0PJX0 185 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 DPRXA6NFQ7 191 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 CCT8L1PA6NM43 557 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 HNRNPCL2B2RXH8 293 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 HNRNPCL3B7ZW38 293 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 CLIC1O00299 241 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 EIF1BO60739 113 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 HNRNPCL1O60812 293 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 TGDSO95455 350 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 THBS1P07996 1170 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 HNRNPCL4P0DMR1 293 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 PRG2P13727 222 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 NCF2P19878 526 aaPredicted RBP13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 IDUAP35475 653 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 ACAA2P42765 397 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 COPZ1P61923 177 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 FAPQ12884 760 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 BNIP2Q12982 314 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 CEACAM7Q14002 265 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 RGNQ15493 299 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 OR7A5Q15622 319 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 TIMM23BQ5SRD1 257 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 WBP2NLQ6ICG8 309 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 GOLGA6L1Q8N7Z2 621 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 OR52E4Q8NGH9 312 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 RAD21L1Q9H4I0 556 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 ASB6Q9NWX5 421 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 THUMPD1Q9NXG2 353 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 NPAP1Q9NZP6 1156 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 CCDC167Q9P0B6 97 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 ZNF232Q9UNY5 417 aa13.86□□□□□ -0.19
CCDC88B-205ENST00000472524 A0A096LPI6 279 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 OR5H1A6NKK0 313 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 AKR7A3O95154 331 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 GPIP06744 558 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 AQP5P55064 265 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 FOXG1P55316 489 aaPredicted RBP13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 ATP5J2P56134 94 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 RPS4XP62701 263 aaKnown RBP13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 H3F3AP84243 136 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 ZNF672Q499Z4 452 aaPredicted RBP13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 ZNF311Q5JNZ3 666 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 OTUD3Q5T2D3 398 aaPredicted RBP13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 C9orf135Q5VTT2 229 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 PAQR6Q6TCH4 344 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 SERPINA11Q86U17 422 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 FUNDC1Q8IVP5 155 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 OR52N5Q8NH56 324 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 SPDL1Q96EA4 605 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 SPATA9Q9BWV2 254 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 SLC9A8Q9Y2E8 581 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 IFT52Q9Y366 437 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 CHST2Q9Y4C5 530 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 FLVCR1Q9Y5Y0 555 aa13.85□□□□□ -0.19
CCDC88B-205ENST00000472524 A0A1W2PP18 115 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 A0A1W2PR80 420 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 LIPT2A6NK58 231 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 C5orf58C9J3I9 102 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 FRS3O43559 492 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 PGM3O95394 542 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 SOD3P08294 240 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 HOXB9P17482 250 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 MRPL19P49406 292 aaKnown RBP13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 MAP2K6P52564 334 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 HOXC5Q00444 222 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 FADDQ13158 208 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 SLC17A1Q14916 467 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 ZSWIM7Q19AV6 140 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 BLOC1S3Q6QNY0 202 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 P2RY8Q86VZ1 359 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 TMEM99Q8N816 258 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 BBS10Q8TAM1 723 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 SMAP2Q8WU79 429 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 CCDC28BQ9BUN5 200 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 ARMC7Q9H6L4 198 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 A4GALTQ9NPC4 353 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 ZNF701Q9NV72 531 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 ADPRHL2Q9NX46 363 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 TAS2R16Q9NYV7 291 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 SLC25A37Q9NYZ2 338 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 SLAMF8Q9P0V8 285 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 UPB1Q9UBR1 384 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 MALT1Q9UDY8 824 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 ADAM21Q9UKJ8 722 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 MAGED1Q9Y5V3 778 aaPredicted RBP13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 CR1P17927 2039 aa13.84□□□□□ -0.19
CCDC88B-205ENST00000472524 A8MVM7 634 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 ABCD4O14678 606 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 TMCC2O75069 709 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 ITGA5P08648 1049 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms