RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 LMF1Q96S06 567 aa12.47□□□□□ -0.41
COL6A3-209ENST00000472056 QRSL1Q9H0R6 528 aaKnown RBP12.47□□□□□ -0.41
COL6A3-209ENST00000472056 GSTO2Q9H4Y5 243 aa12.47□□□□□ -0.41
COL6A3-209ENST00000472056 PSORS1C1Q9UIG5 152 aa12.47□□□□□ -0.41
COL6A3-209ENST00000472056 YIPF1Q9Y548 306 aa12.47□□□□□ -0.41
COL6A3-209ENST00000472056 LY86O95711 162 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 MPIG6BO95866 241 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 IGHG1P01857 330 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 MT-ND4P03905 459 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 T-ENOLP0DO92 83 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 MS4A2Q01362 244 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 KIR2DS3Q14952 304 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 GAS2L1Q99501 681 aaPredicted RBP12.46□□□□□ -0.41
COL6A3-209ENST00000472056 SLC30A3Q99726 388 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 IGSF5Q9NSI5 407 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 CEP250Q9BV73 2442 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 AGPAT2O15120 278 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 YKT6O15498 198 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 HNF1BP35680 557 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 BPIFA2Q96DR5 249 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 PAPOLGQ9BWT3 736 aaKnown RBP12.46□□□□□ -0.41
COL6A3-209ENST00000472056 RAB22AQ9UL26 194 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 TOPAZ1Q8N9V7 1692 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 KCNJ5P48544 419 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 OR4D1Q15615 310 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 EXOSC6Q5RKV6 272 aaKnown RBP12.46□□□□□ -0.41
COL6A3-209ENST00000472056 OPN5Q6U736 354 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 OR1J2Q8NGS2 313 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 FAM174AQ8TBP5 190 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 NRG4Q8WWG1 115 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 ANKRD30BLA7E2S9 258 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 SYT5O00445 386 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 LRRC26Q2I0M4 334 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 SFXN4Q6P4A7 337 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 MRPL21Q7Z2W9 205 aaKnown RBP12.46□□□□□ -0.41
COL6A3-209ENST00000472056 LMO3Q8TAP4 145 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 KLF15Q9UIH9 416 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 LAMP3Q9UQV4 416 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 PUS1Q9Y606 427 aaKnown RBP eCLIP12.46□□□□□ -0.41
COL6A3-209ENST00000472056 ALPK2Q86TB3 2170 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 LOC100289279A0A1B0GTE1 492 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 E5RGE8 158 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 APLNRP35414 380 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 COTL1Q14019 142 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 SUSD1Q6UWL2 747 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 LYPD4Q6UWN0 246 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 ST7LQ8TDW4 575 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 WDR92Q96MX6 357 aa12.46□□□□□ -0.41
COL6A3-209ENST00000472056 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.46□□□□□ -0.42
COL6A3-209ENST00000472056 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.46□□□□□ -0.42
COL6A3-209ENST00000472056 HIDE1A8MVS5 230 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 CTXN2P0C2S0 81 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 RABGGTBP53611 331 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 CAMK2BQ13554 666 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 CTSL3PQ5NE16 218 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF485Q8NCK3 441 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF582Q96NG8 517 aaPredicted RBP12.46□□□□□ -0.42
COL6A3-209ENST00000472056 PKMYT1Q99640 499 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 TMEM59Q9BXS4 323 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 GJD2Q9UKL4 321 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 GLSO94925 669 aaPredicted RBP12.46□□□□□ -0.42
COL6A3-209ENST00000472056 AADACP22760 399 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 TRHRP34981 398 aaPredicted RBP12.46□□□□□ -0.42
COL6A3-209ENST00000472056 POU3F4P49335 361 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 ERVPABLB-1P60509 514 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 BTNL8Q6UX41 500 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 OR5M3Q8NGP4 307 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 TAF9BQ9HBM6 251 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 SLC6A20Q9NP91 592 aa12.46□□□□□ -0.42
COL6A3-209ENST00000472056 DLEC1Q9Y238 1755 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 PLSCR1O15162 318 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 TCRBP04435 133 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 STAG3L2P0CL84 134 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CASP6P55212 293 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 OTOP2Q7RTS6 562 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 ADGRE4PQ86SQ3 457 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 LYSMD2Q8IV50 215 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 GPR52Q9Y2T5 361 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 TMEM129A0AVI4 362 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 A6NLC8 198 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 AHRP35869 848 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CCR9P51686 369 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 MRPS34P82930 218 aaKnown RBP12.45□□□□□ -0.42
COL6A3-209ENST00000472056 Q499Y3 187 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 GTDC1Q4AE62 458 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CHADLQ6NUI6 762 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 FBXW12Q6X9E4 464 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 OR9Q2Q8NGE9 314 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CBY3A6NI87 242 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 LILRB3O75022 631 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CHRM2P08172 466 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 HOXD13P35453 343 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 ACVRL1P37023 503 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 FXYD4P59646 89 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 SEC61A1P61619 476 aaKnown RBP12.45□□□□□ -0.42
COL6A3-209ENST00000472056 GPR155Q7Z3F1 870 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 SLC7A6Q92536 515 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 TOMM40LQ969M1 308 aa12.45□□□□□ -0.42
COL6A3-209ENST00000472056 NSUN5Q96P11 429 aaKnown RBP12.45□□□□□ -0.42
COL6A3-209ENST00000472056 CCNL2Q96S94 520 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms