RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MRPS15P82914 257 aaKnown RBP17.48■□□□□ 0.39
VIM-203ENST00000469543 QPRTQ15274 297 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 Q5BKY6 102 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 SNAP47Q5SQN1 464 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 HBMQ6B0K9 141 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 TRILQ7L0X0 811 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 ZNF615Q8N8J6 731 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 OR14A2Q96R54 314 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 KCNJ15Q99712 375 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 GPR27Q9NS67 375 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.48■□□□□ 0.39
VIM-203ENST00000469543 HMX3A6NHT5 357 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 CENPXA8MT69 81 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 C17orf105B2RV13 164 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 CHURC1-FNTBB4DL54 471 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 NDUFB2O95178 105 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 CLPSP04118 112 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 F13BP05160 661 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 SNRPBP14678 240 aaKnown RBP17.48■□□□□ 0.39
VIM-203ENST00000469543 CD1CP29017 333 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 FNTBP49356 437 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 EFNA3P52797 238 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 ZNF141Q15928 474 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 DMKNQ6E0U4 476 aaPredicted RBP17.48■□□□□ 0.39
VIM-203ENST00000469543 MZT2AQ6P582 158 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 TTLL10Q6ZVT0 673 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 C10orf53Q8N6V4 93 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 ZNF511Q8NB15 262 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 THAP4Q8WY91 577 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 C3orf49Q96BT1 292 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 TRPV5Q9NQA5 729 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 UCKL1Q9NWZ5 548 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 NPAP1Q9NZP6 1156 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 ST6GALNAC2Q9UJ37 374 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 ALG5Q9Y673 324 aa17.48■□□□□ 0.39
VIM-203ENST00000469543 COL4A2P08572 1712 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 A0A087WUJ7 227 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 H7C1C5 153 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 PRAMEF2O60811 474 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 F8A1P23610 371 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 DDOSTP39656 456 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 AQP2P41181 271 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 CAPZBP47756 277 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 INPP1P49441 399 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 CCR5P51681 352 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 LCN6P62502 163 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 BDH1Q02338 343 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 C6orf183Q5T699 404 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 NPEPL1Q8NDH3 523 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 HSD17B8Q92506 261 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 TSLPQ969D9 159 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 SGTBQ96EQ0 304 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 Q96M85 177 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 OR8D2Q9GZM6 311 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 AK6Q9Y3D8 172 aaKnown RBP17.47■□□□□ 0.39
VIM-203ENST00000469543 IGKV1D-42A0A075B6H8 117 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 EEF1E1O43324 174 aaKnown RBP17.47■□□□□ 0.39
VIM-203ENST00000469543 SC5DO75845 299 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 MST1P26927 711 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 KRT74Q7RTS7 529 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 TRMT10AQ8TBZ6 339 aaKnown RBP17.47■□□□□ 0.39
VIM-203ENST00000469543 PHOSPHO1Q8TCT1 267 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 KIAA1143Q96AT1 154 aaPredicted RBP17.47■□□□□ 0.39
VIM-203ENST00000469543 THAP7Q9BT49 309 aaPredicted RBP17.47■□□□□ 0.39
VIM-203ENST00000469543 MKKSQ9NPJ1 570 aaPredicted RBP17.47■□□□□ 0.39
VIM-203ENST00000469543 POLE3Q9NRF9 147 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 SERTAD3Q9UJW9 196 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 CA14Q9ULX7 337 aa17.47■□□□□ 0.39
VIM-203ENST00000469543 SRPX2O60687 465 aaPredicted RBP17.46■□□□□ 0.39
VIM-203ENST00000469543 BLKP51451 505 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 BCL2A1Q16548 175 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 IZUMO1Q8IYV9 350 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 PTPMT1Q8WUK0 201 aaPredicted RBP17.46■□□□□ 0.39
VIM-203ENST00000469543 SNX33Q8WV41 574 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 TCTN2Q96GX1 697 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 ZFP3Q96NJ6 502 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 NXF5Q9H1B4 397 aaKnown RBP17.46■□□□□ 0.39
VIM-203ENST00000469543 MRPS33Q9Y291 106 aaKnown RBP17.46■□□□□ 0.39
VIM-203ENST00000469543 PCDHGB7Q9Y5F8 929 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 DCTN6O00399 190 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 HLA-DQB1P01920 261 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 MLLT3P42568 568 aaPredicted RBP17.46■□□□□ 0.39
VIM-203ENST00000469543 CDKN2AP42771 156 aaKnown RBP17.46■□□□□ 0.39
VIM-203ENST00000469543 GABRA4P48169 554 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 RPS11P62280 158 aaKnown RBP eCLIP17.46■□□□□ 0.39
VIM-203ENST00000469543 FUT7Q11130 342 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.46■□□□□ 0.39
VIM-203ENST00000469543 ARHGAP11AQ6P4F7 1023 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 PXKQ7Z7A4 578 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 ZNF595Q8IYB9 648 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 ADOQ96SZ5 270 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 GALNT9Q9HCQ5 603 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 RPRD1BQ9NQG5 326 aaKnown RBP17.46■□□□□ 0.39
VIM-203ENST00000469543 CYSLTR2Q9NS75 346 aa17.46■□□□□ 0.39
VIM-203ENST00000469543 IGHV1OR15-9A0A0B4J2B8 117 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 NSA2O95478 260 aaKnown RBP17.45■□□□□ 0.38
VIM-203ENST00000469543 IFNGP01579 166 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 ATF1P18846 271 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 GPALPP1Q8IXQ4 340 aa17.45■□□□□ 0.38
VIM-203ENST00000469543 GCDHQ92947 438 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms