RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TNK1Q13470 666 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 CHRFAM7AQ494W8 412 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 GLIPR1L2Q4G1C9 344 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 C16orf89Q6UX73 402 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 GRINAQ7Z429 371 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 MEIOBQ8N635 442 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 SMYD1Q8NB12 490 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 SLC26A7Q8TE54 656 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 RASSF5Q8WWW0 418 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 EVA1AQ9H8M9 152 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 KLHL28Q9NXS3 571 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 ADA2Q9NZK5 511 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 GMPR2Q9P2T1 348 aaKnown RBP10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 NDRG3Q9UGV2 375 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 SLC13A4Q9UKG4 626 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 PRDM4Q9UKN5 801 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 B2RBV5 119 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 EEF1E1-BLOC1S5C9J1V9 151 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 SEC14L5O43304 696 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 EEF1E1O43324 174 aaKnown RBP10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 IFNA14P01570 189 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 TP53P04637 393 aaPredicted RBP10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 PRG2P13727 222 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 IL11P20809 199 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 KDELR2P33947 212 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 CPOXP36551 454 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 KCNJ5P48544 419 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 RAC1P63000 192 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 FOXF2Q12947 444 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 DUSP7Q16829 419 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 OR2A2Q6IF42 318 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 C3orf33Q6P1S2 294 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 PLEKHM3Q6ZWE6 761 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 GGNQ86UU5 652 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 COMTD1Q86VU5 262 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 UBQLNLQ8IYU4 475 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 DEFB107AQ8IZN7 70 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 RBM15BQ8NDT2 890 aaKnown RBP10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 GPR32P1Q8NGA4 272 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 INTS12Q96CB8 462 aaKnown RBP10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 KCTD14Q9BQ13 255 aaPredicted RBP10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 PIGMQ9H3S5 423 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 UBTD1Q9HAC8 227 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 YAE1D1Q9NRH1 226 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 MED12LQ86YW9 2145 aa10.63□□□□□ -0.71
SQSTM1-206ENST00000466342 A8MXE2 369 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 CXCR6O00574 342 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 GSTA4O15217 222 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 FRS3O43559 492 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 EFNA2O43921 213 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 UBOX5O94941 541 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 LGI1O95970 557 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 FAM157CP0CG43 387 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 PAX1P15863 534 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 CD247P20963 164 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 ME2P23368 584 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 APOBEC1P41238 236 aaKnown RBP10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 SLC1A3P43003 542 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 HTR3AP46098 478 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 PCYT1AP49585 367 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 SUCLG1P53597 346 aaKnown RBP10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 CLDN15P56746 228 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 CLDN20P56880 219 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 RGS8P57771 180 aaPredicted RBP10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 COPZ1P61923 177 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 MERTKQ12866 999 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 NRF1Q16656 503 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 SPATS1Q496A3 300 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 LRRC23Q53EV4 343 aaPredicted RBP10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 SAMD4BQ5PRF9 694 aaKnown RBP10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 WBP2NLQ6ICG8 309 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 C20orf204Q6ZNR8 217 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 RINLQ6ZS11 566 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 ESPNLQ6ZVH7 1005 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 P4HA3Q7Z4N8 544 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 LILRA2Q8N149 483 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 MAPK1IP1LQ8NDC0 245 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 KLHL15Q96M94 604 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 CDRT15Q96T59 188 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 ARHGDIGQ99819 225 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 C19orf24Q9BVV8 132 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 RBM24Q9BX46 236 aaKnown RBP10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 TMEM185BQ9H7F4 350 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 CTPS2Q9NRF8 586 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 SERINC1Q9NRX5 453 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 TESQ9UGI8 421 aaKnown RBP10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 PACSIN3Q9UKS6 424 aa10.62□□□□□ -0.71
SQSTM1-206ENST00000466342 USF3Q68DE3 2245 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 SLC22A20A6NK97 555 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 GJE1A6NN92 205 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 H0YC42 278 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 EIF1AYO14602 144 aaKnown RBP10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 MSTNO14793 375 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 CD5LO43866 347 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 TGM6O95932 706 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 FESP07332 822 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 HSD17B1P14061 328 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 GGT1P19440 569 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 SHC1P29353 583 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 TACR3P29371 465 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms