RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 FAM111BQ6SJ93 734 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 ZNF836Q6ZNA1 936 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 OR2AK2Q8NG84 335 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 AIF1LQ9BQI0 150 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 CPEB1Q9BZB8 566 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 CAPN10Q9HC96 672 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 ACSS1Q9NUB1 689 aaPredicted RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 SPG21Q9NZD8 308 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 OR5V1Q9UGF6 321 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 FOXJ3Q9UPW0 622 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 FRMPD3Q5JV73 1810 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 MTCL1Q9Y4B5 1905 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 A0A1B0GTH9 108 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 C4orf47A7E2U8 309 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 CACNB4O00305 520 aaPredicted RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 CCSO14618 274 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 ABCD4O14678 606 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 ERI3O43414 337 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 NARSO43776 548 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 RPP14O95059 124 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 CXCL14O95715 111 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 CPN1P15169 458 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 DPP4P27487 766 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 CERS1P27544 350 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 MPGP29372 298 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 STARP49675 285 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 DLX5P56178 289 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 CDK5R1Q15078 307 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 RBMS2Q15434 407 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 C4orf46Q504U0 113 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 MAMSTRQ6ZN01 415 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 METTL3Q86U44 580 aaKnown RBP10.79□□□□□ -0.68
CPSF3-202ENST00000460593 TIFAQ96CG3 184 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 IL21Q9HBE4 155 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 KLHL28Q9NXS3 571 aa10.79□□□□□ -0.68
CPSF3-202ENST00000460593 DENND4AQ7Z401 1863 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 PRSS44E7EML9 344 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 ZNF254O75437 659 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 ELNP15502 786 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 HOXA1P49639 335 aaPredicted RBP10.78□□□□□ -0.68
CPSF3-202ENST00000460593 STX4Q12846 297 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 ZNF658BQ4V348 819 aaPredicted RBP10.78□□□□□ -0.68
CPSF3-202ENST00000460593 FAM46CQ5VWP2 391 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 ZC3H14Q6PJT7 736 aaKnown RBP10.78□□□□□ -0.68
CPSF3-202ENST00000460593 TSSK4Q6SA08 328 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 OR4C16Q8NGL9 310 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 SNX33Q8WV41 574 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 MICU1Q9BPX6 476 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 JAM3Q9BX67 310 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 TMPRSS13Q9BYE2 586 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 NRIP3Q9NQ35 241 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 C2orf42Q9NWW7 574 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 EDARQ9UNE0 448 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 UBE2QL1A1L167 161 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 OR6C68A6NDL8 312 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 IFITM5A6NNB3 132 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 RASGRP1O95267 797 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 AIFM1O95831 613 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 ADCYAP1P18509 176 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 ITPKBP27987 946 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 MEOX2P50222 304 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 PPP2CBP62714 309 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 PPP2CAP67775 309 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 MANEAQ5SRI9 462 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 MPP7Q5T2T1 576 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 OTPQ5XKR4 325 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 TMED4Q7Z7H5 227 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 CACUL1Q86Y37 369 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 OR52E2Q8NGJ4 325 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 OR51S1Q8NGJ8 323 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 OR1S2Q8NGQ3 325 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 TFGQ92734 400 aaPredicted RBP10.78□□□□□ -0.68
CPSF3-202ENST00000460593 FBXO17Q96EF6 278 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 SEC22AQ96IW7 307 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 MS4A4EQ96PG1 132 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 TNFRSF13CQ96RJ3 184 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 DNTTIP1Q9H147 329 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 ZDHHC4Q9NPG8 344 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 STARD7Q9NQZ5 370 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 ASF1BQ9NVP2 202 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 FBXO4Q9UKT5 387 aa10.78□□□□□ -0.68
CPSF3-202ENST00000460593 ZNF443Q9Y2A4 671 aaPredicted RBP10.78□□□□□ -0.68
CPSF3-202ENST00000460593 TRAV14DV4A0A0A6YYC5 116 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 TRAV1-2A0A0B4J238 106 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 FAM86C2PA6NEL3 165 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 SLC22A31A6NKX4 558 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 SPP1P10451 314 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 ACADLP28330 430 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 CALCRP30988 508 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 RAB13P51153 203 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 TAS2R20P59543 309 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 ID2Q02363 134 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 SMIM19Q96E16 107 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 LMLNQ96KR4 655 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 CRB3Q9BUF7 120 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 BARX1Q9HBU1 254 aaPredicted RBP10.77□□□□□ -0.68
CPSF3-202ENST00000460593 CTSFQ9UBX1 484 aa10.77□□□□□ -0.68
CPSF3-202ENST00000460593 TRBV23-1A0A0A0MS06 115 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 A0A0A6YYD5 115 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 LEFTY2O00292 366 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms