RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CAV3P56539 151 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 ZNF763Q0D2J5 394 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 AFMIDQ63HM1 303 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 SFXN4Q6P4A7 337 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 OPN5Q6U736 354 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 COMMD1Q8N668 190 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 OR4K5Q8NGD3 323 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 MS4A4AQ96JQ5 239 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 IGKV6-21A0A0C4DH24 114 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 MDFIC2A0A1B0GVS7 189 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 SCDO00767 359 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 GPR171O14626 319 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 ZNF207O43670 478 aaKnown RBP12.43□□□□□ -0.42
USP40-208ENST00000450966 DUX1O43812 170 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 PTP4A3O75365 173 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 TBX18O95935 607 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 ATP1B2P14415 290 aaPredicted RBP12.43□□□□□ -0.42
USP40-208ENST00000450966 HNRNPKP61978 463 aaKnown RBP eCLIP12.43□□□□□ -0.42
USP40-208ENST00000450966 FAM3CQ92520 227 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 ENY2Q9NPA8 101 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 MRPL22Q9NWU5 206 aaKnown RBP12.43□□□□□ -0.42
USP40-208ENST00000450966 IL17BQ9UHF5 180 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 PIAS3Q9Y6X2 628 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 CNMDO75829 334 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 RPS25P62851 125 aaKnown RBP12.43□□□□□ -0.42
USP40-208ENST00000450966 HSF1Q00613 529 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 GRHL3Q8TE85 626 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 CLEC4CQ8WTT0 213 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 CDKN2AIPNLQ96HQ2 116 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 TMEM231Q9H6L2 316 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 SEMA4GQ9NTN9 838 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 SLC2A6Q9UGQ3 507 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 DMRT1Q9Y5R6 373 aa12.43□□□□□ -0.42
USP40-208ENST00000450966 PLCH1Q4KWH8 1693 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 MBLAC1A4D2B0 266 aaPredicted RBP12.42□□□□□ -0.42
USP40-208ENST00000450966 PRAMEF11O60813 436 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 STC1P52823 247 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 ZNF266Q14584 549 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 ADIRFQ15847 76 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 LCN10Q6JVE6 187 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 ADAMTS18Q8TE60 1221 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 CYB5D2Q8WUJ1 264 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 SEC22AQ96IW7 307 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 Q9N2J8 555 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 EXOSC3Q9NQT5 275 aaKnown RBP12.42□□□□□ -0.42
USP40-208ENST00000450966 PTGDR2Q9Y5Y4 395 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 ZNF850A8MQ14 1090 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 NDUFS4O43181 175 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 NCR1O76036 304 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 CA3P07451 260 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 ANXA7P20073 488 aaKnown RBP12.42□□□□□ -0.42
USP40-208ENST00000450966 PCGF2P35227 344 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 NFATC2Q13469 925 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 MLIPQ5VWP3 458 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 TMEM71Q6P5X7 295 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 OR6N2Q8NGY6 317 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 ZNF75AQ96N20 296 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 PLEKHA3Q9HB20 300 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 C4AP0C0L4 1744 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 H7BYZ3 331 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 DPM1O60762 260 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 HLA-DQB2P05538 268 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 GNB3P16520 340 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 KIR2DL3P43628 341 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 DAPP51397 102 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 NHLH2Q02577 135 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 CCINQ13939 588 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 GRM7Q14831 915 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 CTF1Q16619 201 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 FAM46AQ96IP4 442 aaKnown RBP12.42□□□□□ -0.42
USP40-208ENST00000450966 TMEM68Q96MH6 324 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 NSUN5Q96P11 429 aaKnown RBP12.42□□□□□ -0.42
USP40-208ENST00000450966 TRIB3Q96RU7 358 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 ARV1Q9H2C2 271 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 DUSP21Q9H596 190 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 PIGVQ9NUD9 493 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 OR51F1A6NGY5 319 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 SAP18O00422 153 aaKnown RBP12.42□□□□□ -0.42
USP40-208ENST00000450966 BCL2L11O43521 198 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 POP7O75817 140 aaKnown RBP12.42□□□□□ -0.42
USP40-208ENST00000450966 EGFP01133 1207 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 METTL15P1P0C7V9 234 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 NAA10P41227 235 aaPredicted RBP12.42□□□□□ -0.42
USP40-208ENST00000450966 SH3BP2P78314 561 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 SEMG2Q02383 582 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 IL20RBQ6UXL0 311 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 OSTM1Q86WC4 334 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 PQLC3Q8N755 202 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 OR4F15Q8NGB8 312 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 OR51L1Q8NGJ5 315 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 PROKR1Q8TCW9 393 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 CREB3L4Q8TEY5 395 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 DPH2Q9BQC3 489 aaPredicted RBP12.42□□□□□ -0.42
USP40-208ENST00000450966 METTL9Q9H1A3 318 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 PPP1R14DQ9NXH3 145 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 GRHPRQ9UBQ7 328 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 CLEC4EQ9ULY5 219 aa12.42□□□□□ -0.42
USP40-208ENST00000450966 A0A0G2JN53 185 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 A0A1B0GTW7 788 aa12.41□□□□□ -0.42
USP40-208ENST00000450966 NDUFS8O00217 210 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms