RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 COL6A5A8TX70 2615 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 ROS1P08922 2347 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 CR1P17927 2039 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 A0A096LNT2 108 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 CENPVL1A0A0U1RR11 272 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 LOC100289279A0A1B0GTE1 492 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 AGAP5A6NIR3 686 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 OR6C65A6NJZ3 312 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 PDLIM1O00151 329 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 SCN2BO60939 215 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 CRYAAP02489 173 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 ERCC1P07992 297 aaPredicted RBP11.64□□□□□ -0.55
HMGB3-204ENST00000448905 SRD5A1P18405 259 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 CDH2P19022 906 aaPredicted RBP11.64□□□□□ -0.55
HMGB3-204ENST00000448905 TACR3P29371 465 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 SERPINF1P36955 418 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 COPZ1P61923 177 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 SPOCK1Q08629 439 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 LRRC74AQ0VAA2 488 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 PDCD2Q16342 344 aaPredicted RBP11.64□□□□□ -0.55
HMGB3-204ENST00000448905 IQCCQ4KMZ1 466 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 OTUD3Q5T2D3 398 aaPredicted RBP11.64□□□□□ -0.55
HMGB3-204ENST00000448905 TSPO2Q5TGU0 170 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 LIPNQ5VXI9 398 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 FAM166AQ6J272 317 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 FRRS1Q6ZNA5 592 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 ZNF440Q8IYI8 595 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 CNOT9Q92600 299 aaKnown RBP11.64□□□□□ -0.55
HMGB3-204ENST00000448905 FBXO17Q96EF6 278 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 PPP1R36Q96LQ0 422 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 SLC35A5Q9BS91 424 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 PIMREGQ9BSJ6 248 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 TAPBPLQ9BX59 468 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 MYOZ1Q9NP98 299 aaPredicted RBP11.64□□□□□ -0.55
HMGB3-204ENST00000448905 LGALS13Q9UHV8 139 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 OSGIN1Q9UJX0 560 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 MOKQ9UQ07 419 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 CUBNO60494 3623 aa11.64□□□□□ -0.55
HMGB3-204ENST00000448905 LOC390937A0A1W2PQ73 354 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 FAAHO00519 579 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 BIRC5O15392 142 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 VAMP5O95183 116 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 SERPINE1P05121 402 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 DBIP07108 87 aaKnown RBP11.63□□□□□ -0.55
HMGB3-204ENST00000448905 IGHV4-31P0DP07 118 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 NR2F1P10589 423 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 LBPP18428 481 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 RPL14P50914 215 aaKnown RBP11.63□□□□□ -0.55
HMGB3-204ENST00000448905 UBE2NP61088 152 aaKnown RBP11.63□□□□□ -0.55
HMGB3-204ENST00000448905 GGTLC2Q14390 218 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 SQLEQ14534 574 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 CASP8Q14790 479 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 CARTPTQ16568 116 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 B3GLCTQ6Y288 498 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 LRRC74BQ6ZQY2 392 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 ZNF621Q6ZSS3 439 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 SLC46A3Q7Z3Q1 461 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 GPAT4Q86UL3 456 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 PEX5LQ8IYB4 626 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 LRRC34Q8IZ02 419 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 TMEM45BQ96B21 275 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 AURKBQ96GD4 344 aaPredicted RBP11.63□□□□□ -0.55
HMGB3-204ENST00000448905 BOD1Q96IK1 185 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 PANX1Q96RD7 426 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 VRK1Q99986 396 aaPredicted RBP11.63□□□□□ -0.55
HMGB3-204ENST00000448905 ARMC7Q9H6L4 198 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 CACYBPQ9HB71 228 aaKnown RBP11.63□□□□□ -0.55
HMGB3-204ENST00000448905 BTNL2Q9UIR0 455 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 ZNF232Q9UNY5 417 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 RAP2CQ9Y3L5 183 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 ATRQ13535 2644 aa11.63□□□□□ -0.55
HMGB3-204ENST00000448905 TMEM72A0PK05 275 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 CCDC154A6NI56 674 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 CLDN24A6NM45 220 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 B9A039 149 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 HMGN4O00479 90 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 KLF11O14901 512 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 KRT75O95678 551 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 IMPDH2P12268 514 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 APEHP13798 732 aaKnown RBP11.62□□□□□ -0.55
HMGB3-204ENST00000448905 HOXB1P14653 301 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-204ENST00000448905 ARRB2P32121 409 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 NR4A2P43354 598 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 FOXG1P55316 489 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-204ENST00000448905 ABCE1P61221 599 aaKnown RBP11.62□□□□□ -0.55
HMGB3-204ENST00000448905 CEACAM7Q14002 265 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 ZSWIM7Q19AV6 140 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 SWI5Q1ZZU3 235 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 RNF130Q86XS8 419 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 OR9K2Q8NGE7 335 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 WDR60Q8WVS4 1066 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 CCDC115Q96NT0 180 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 ZNF317Q96PQ6 595 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-204ENST00000448905 ZBTB18Q99592 522 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 ADAM19Q9H013 955 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 RAB1BQ9H0U4 201 aa11.62□□□□□ -0.55
HMGB3-204ENST00000448905 WDR91A4D1P6 747 aa11.61□□□□□ -0.55
HMGB3-204ENST00000448905 A8MVM7 634 aa11.61□□□□□ -0.55
HMGB3-204ENST00000448905 ZNF587BE7ETH6 402 aa11.61□□□□□ -0.55
HMGB3-204ENST00000448905 E9PBE3 544 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms