RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 HCAR3P49019 387 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 SERPINB8P50452 374 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 METAP1P53582 386 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 RAG2P55895 527 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 ABCE1P61221 599 aaKnown RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 SRYQ05066 204 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 PPIDQ08752 370 aaKnown RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 RBBP4Q09028 425 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 EXOSC2Q13868 293 aaKnown RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 KLF5Q13887 457 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 TAB1Q15750 504 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 CCDC6Q16204 474 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 LRIT3Q3SXY7 679 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 DCAF12Q5T6F0 453 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 RWDD4Q6NW29 188 aaKnown RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 NIPAL3Q6P499 406 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 C19orf48Q6RUI8 117 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 CBLN3Q6UW01 205 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 CXCL17Q6UXB2 119 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 WASH2PQ6VEQ5 465 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 ZNF730Q6ZMV8 503 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 LPCAT2Q7L5N7 544 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 LRRC70Q7Z2Q7 622 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 P4HA3Q7Z4N8 544 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 LHFPL4Q7Z7J7 247 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 CMC1Q7Z7K0 106 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 RPAINQ86UA6 219 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 TAC4Q86UU9 113 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 ITIH5Q86UX2 942 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 HOGA1Q86XE5 327 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 C10orf107Q8IVU9 208 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 CCDC36Q8IYA8 594 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 LSMEM2Q8N112 164 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 ZCCHC7Q8N3Z6 543 aaKnown RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 SPEM1Q8N4L4 309 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 DCLK2Q8N568 766 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 WDSUB1Q8N9V3 476 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 TRPV1Q8NER1 839 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 OR2T3Q8NH03 318 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 OR6S1Q8NH40 331 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 RPLP0P6Q8NHW5 317 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 MAPK15Q8TD08 544 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 SMAP2Q8WU79 429 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 LIPHQ8WWY8 451 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 AZIN2Q96A70 460 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 ZNF486Q96H40 463 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 VSTM2LQ96N03 204 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 VPS35Q96QK1 796 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 ZNF607Q96SK3 696 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 RBBP8Q99708 897 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 CCT7Q99832 543 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 EBF4Q9BQW3 602 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 DCTN5Q9BTE1 182 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 RBM24Q9BX46 236 aaKnown RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 C20orf27Q9GZN8 174 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 GBA3Q9H227 469 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 VCX2Q9H322 139 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 FNDC4Q9H6D8 234 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 ZNF696Q9H7X3 374 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 KAT8Q9H7Z6 458 aaKnown RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 YY1AP1Q9H869 796 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 LRRC40Q9H9A6 602 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 ZNF334Q9HCZ1 680 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 C20orf96Q9NUD7 363 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 TEX10Q9NXF1 929 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 SMPD3Q9NY59 655 aaPredicted RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 BFARQ9NZS9 450 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 EMCNQ9ULC0 261 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 VANGL2Q9ULK5 521 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 RPL26L1Q9UNX3 145 aaKnown RBP3.52□□□□□ -1.85
VPS29-202ENST00000447578 FKBP7Q9Y680 259 aa3.52□□□□□ -1.85
VPS29-202ENST00000447578 PLXNB2O15031 1838 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 DICER1Q9UPY3 1922 aaKnown RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 IGHV4-4A0A075B6R2 117 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 IQCMA0A1B0GVH7 501 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 ARL5CA6NH57 179 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 GOLGA8TH3BQL2 631 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 H3BTX0 84 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 AP3B1O00203 1094 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 SDHDO14521 159 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 ZNF195O14628 629 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 TSPAN2O60636 221 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 MAGEC1O60732 1142 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 DUSP11O75319 330 aaKnown RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 ZNF821O75541 412 aaPredicted RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 NEBLO76041 1014 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 STK17BO94768 372 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 NDUFA7O95182 113 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 GOT2P00505 430 aaKnown RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 PGK1P00558 417 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 CSF2P04141 144 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 RPLP0P05388 317 aaKnown RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 UGT2B4P06133 528 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 SERPINA6P08185 405 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 ANXA4P09525 319 aaPredicted RBP3.51□□□□□ -1.85
VPS29-202ENST00000447578 ZNF883P0CG24 379 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 GSTT2P0CG29 244 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 GSTT2BP0CG30 244 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 RALBP11234 206 aa3.51□□□□□ -1.85
VPS29-202ENST00000447578 CD52P31358 61 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms