RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 SF3B4Q15427 424 aaKnown RBP eCLIP11.41□□□□□ -0.585e-6■■■■□ 26.7
SCLT1-202ENST00000439369 TAF11Q15544 211 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 ZNF74Q16587 644 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 TMEM176BQ3YBM2 270 aaPredicted RBP11.41□□□□□ -0.58
SCLT1-202ENST00000439369 PPP4R4Q6NUP7 873 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 TBPL2Q6SJ96 375 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 ZBTB49Q6ZSB9 765 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 TMPPEQ6ZT21 453 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 MAMDC2Q7Z304 686 aaPredicted RBP11.41□□□□□ -0.58
SCLT1-202ENST00000439369 ZER1Q7Z7L7 766 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 EPHX4Q8IUS5 362 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 SLC43A2Q8N370 569 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 CISD2Q8N5K1 135 aaKnown RBP11.41□□□□□ -0.58
SCLT1-202ENST00000439369 SCAIQ8N9R8 606 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 ATG16L2Q8NAA4 619 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 AQP11Q8NBQ7 271 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 ADPRHL1Q8NDY3 354 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 OR2V1Q8NHB1 315 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 PFN4Q8NHR9 129 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 TAAR8Q969N4 342 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 SNRNP40Q96DI7 357 aaKnown RBP11.41□□□□□ -0.58
SCLT1-202ENST00000439369 KTI12Q96EK9 354 aaPredicted RBP11.41□□□□□ -0.58
SCLT1-202ENST00000439369 ADGRG7Q96K78 797 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 OR5B2Q96R09 309 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 FEVQ99581 238 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 TIMP4Q99727 224 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 CIB1Q99828 191 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 PTDSS2Q9BVG9 487 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 TAPBPLQ9BX59 468 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 OR11A1Q9GZK7 315 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 PRDM14Q9GZV8 571 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 VCXQ9H320 206 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 ALKBH4Q9NXW9 302 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 LUZP4Q9P127 313 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 SLC6A5Q9Y345 797 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 LIPGQ9Y5X9 500 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 TPRP12270 2363 aaKnown RBP11.41□□□□□ -0.58
SCLT1-202ENST00000439369 CFAP47Q6ZTR5 3102 aa11.41□□□□□ -0.58
SCLT1-202ENST00000439369 MAP1BP46821 2468 aaKnown RBP11.41□□□□□ -0.58
SCLT1-202ENST00000439369 CELSR3Q9NYQ7 3312 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 PCNX3Q9H6A9 2034 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 LIPT2A6NK58 231 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 EFCAB9A8MZ26 197 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 H0YJX3 145 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 SULT2B1O00204 365 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 SFTPDP35247 375 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 ALDH3A2P51648 485 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 TDGF1P3P51864 188 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 NUP107P57740 925 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 RAC3P60763 192 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 SLC35A1P78382 337 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 PPP1R8Q12972 351 aaKnown RBP11.4□□□□□ -0.58
SCLT1-202ENST00000439369 DAG1Q14118 895 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 ZNF239Q16600 458 aaKnown RBP11.4□□□□□ -0.58
SCLT1-202ENST00000439369 CTU2Q2VPK5 515 aaKnown RBP11.4□□□□□ -0.58
SCLT1-202ENST00000439369 RFX4Q33E94 735 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 KDM4DQ6B0I6 523 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 RPL13AP3Q6NVV1 102 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 PRICKLE2Q7Z3G6 844 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 SLC46A3Q7Z3Q1 461 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 PARP8Q8N3A8 854 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 CLDN22Q8N7P3 220 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 OR9Q2Q8NGE9 314 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 CPNE4Q96A23 557 aaPredicted RBP11.4□□□□□ -0.58
SCLT1-202ENST00000439369 ZHX1-C8orf76Q96EF9 292 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 ARL5BQ96KC2 179 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 RDH12Q96NR8 316 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 ASPNQ9BXN1 380 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 UCK2Q9BZX2 261 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 NDEL1Q9GZM8 345 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 TMEM185BQ9H7F4 350 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 NANSQ9NR45 359 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 C20orf141Q9NUB4 165 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 MRPL39Q9NYK5 338 aaKnown RBP11.4□□□□□ -0.58
SCLT1-202ENST00000439369 KIF17Q9P2E2 1029 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 SPRR3Q9UBC9 169 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 B3GALT5Q9Y2C3 310 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 POFUT2Q9Y2G5 429 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 NCKAP5O14513 1909 aa11.4□□□□□ -0.58
SCLT1-202ENST00000439369 A0A0J9YW62 118 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 TTLL8A6PVC2 850 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 KPNA4O00629 521 aaPredicted RBP11.39□□□□□ -0.59
SCLT1-202ENST00000439369 PIP5K1CO60331 668 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 CH25HO95992 272 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 GASTP01350 101 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 HIST1H2ABP04908 130 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 ALPLP05186 524 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 HOXD4P09016 255 aaPredicted RBP11.39□□□□□ -0.59
SCLT1-202ENST00000439369 TSPAN19P0C672 248 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 ASAH2BP0C7U1 165 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 SAGP10523 405 aaPredicted RBP11.39□□□□□ -0.59
SCLT1-202ENST00000439369 IMPDH2P12268 514 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 EDN3P14138 238 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 CDH2P19022 906 aaPredicted RBP11.39□□□□□ -0.59
SCLT1-202ENST00000439369 FUT1P19526 365 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 MAKP20794 623 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 GTF2E2P29084 291 aaKnown RBP11.39□□□□□ -0.59
SCLT1-202ENST00000439369 SHC1P29353 583 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 PTGER4P35408 488 aa11.39□□□□□ -0.59
SCLT1-202ENST00000439369 RPS5P46782 204 aaKnown RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms