RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 EIF1AXP47813 144 aaKnown RBP11.11□□□□□ -0.63
USP40-205ENST00000430158 DIO1P49895 249 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 H3F3AP84243 136 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 VLDLRP98155 873 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 TRAP1Q12931 704 aaKnown RBP11.11□□□□□ -0.63
USP40-205ENST00000430158 PIN1Q13526 163 aaPredicted RBP11.11□□□□□ -0.63
USP40-205ENST00000430158 PON3Q15166 354 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 SF3B4Q15427 424 aaKnown RBP eCLIP11.11□□□□□ -0.63
USP40-205ENST00000430158 ZNF239Q16600 458 aaKnown RBP11.11□□□□□ -0.63
USP40-205ENST00000430158 ALG10BQ5I7T1 473 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 TMEM211Q6ICI0 200 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 CYP2R1Q6VVX0 501 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 GDF7Q7Z4P5 450 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 LIX1LQ8IVB5 337 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 FAM26EQ8N5C1 309 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 LZICQ8WZA0 190 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 UTP4Q969X6 686 aaKnown RBP11.11□□□□□ -0.63
USP40-205ENST00000430158 SLC47A1Q96FL8 570 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 PYURFQ96I23 114 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 NSMCE2Q96MF7 247 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 OR5B2Q96R09 309 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 TMEM43Q9BTV4 400 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 RNF122Q9H9V4 155 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 PAQR5Q9NXK6 330 aaPredicted RBP11.11□□□□□ -0.63
USP40-205ENST00000430158 NDUFAF4Q9P032 175 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 SLC7A8Q9UHI5 535 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 RIMS3Q9UJD0 308 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 SAMD4AQ9UPU9 718 aaKnown RBP11.11□□□□□ -0.63
USP40-205ENST00000430158 RNF6Q9Y252 685 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 SPIN1Q9Y657 262 aaPredicted RBP11.11□□□□□ -0.63
USP40-205ENST00000430158 ENPP4Q9Y6X5 453 aa11.11□□□□□ -0.63
USP40-205ENST00000430158 SLC22A20A6NK97 555 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 J3KTA2 159 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 SMAD9O15198 467 aaKnown RBP11.1□□□□□ -0.63
USP40-205ENST00000430158 DNPH1O43598 174 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 CHP2O43745 196 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 ENPP1P22413 925 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 P2RY4P51582 365 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 RPS3AP61247 264 aaKnown RBP11.1□□□□□ -0.63
USP40-205ENST00000430158 LTBQ06643 244 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 FOXF2Q12947 444 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 C1orf140Q5VVS0 124 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 MTFR2Q6P444 385 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 DEF8Q6ZN54 512 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 DHFR2Q86XF0 187 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 CCDC71Q8IV32 467 aaPredicted RBP11.1□□□□□ -0.63
USP40-205ENST00000430158 NKAIN4Q8IVV8 208 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 RNF128Q8TEB7 428 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 ROBO4Q8WZ75 1007 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 KTI12Q96EK9 354 aaPredicted RBP11.1□□□□□ -0.63
USP40-205ENST00000430158 SLC41A3Q96GZ6 507 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 DHRS1Q96LJ7 313 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 PRRC1Q96M27 445 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 FUZQ9BT04 418 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 RPS6KB2Q9UBS0 482 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 POMPQ9Y244 141 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 CENPEQ02224 2701 aa11.1□□□□□ -0.63
USP40-205ENST00000430158 ABCA4P78363 2273 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 ELOA3DA6NLF2 546 aaPredicted RBP11.09□□□□□ -0.63
USP40-205ENST00000430158 SULT2B1O00204 365 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 EBAG9O00559 213 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 RAMP1O60894 148 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 TNFSF13O75888 250 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 IFNW1P05000 195 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 TFPIP10646 304 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 THRBP10828 461 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 AGAP20933 346 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 SLC7A1P30825 629 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 MAGEA2P43356 314 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 KIR2DL2P43627 348 aaPredicted RBP11.09□□□□□ -0.63
USP40-205ENST00000430158 YAP1P46937 504 aaKnown RBP11.09□□□□□ -0.63
USP40-205ENST00000430158 RASSF2P50749 326 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 PRR20EP86478 221 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 PRR20CP86479 221 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 PRR20DP86480 221 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 PRR20BP86481 221 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 PRR20AP86496 221 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 ELOA3BQ3SY89 546 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 MTX3Q5HYI7 312 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 PDSS1Q5T2R2 415 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 LCE2AQ5TA79 106 aaPredicted RBP11.09□□□□□ -0.63
USP40-205ENST00000430158 ABLIM2Q6H8Q1 611 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 NHLRC1Q6VVB1 395 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 FKBP9P1Q75LS8 142 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 PIWIL3Q7Z3Z3 882 aaKnown RBP11.09□□□□□ -0.63
USP40-205ENST00000430158 P3H2Q8IVL5 708 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 OFCC1Q8IZS5 231 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 PIK3C3Q8NEB9 887 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 ELOA3Q8NG57 546 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 OR6S1Q8NH40 331 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 MFSD8Q8NHS3 518 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 RND1Q92730 232 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 TAAR8Q969N4 342 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 CPNE4Q96A23 557 aaPredicted RBP11.09□□□□□ -0.63
USP40-205ENST00000430158 CCDC124Q96CT7 223 aaKnown RBP11.09□□□□□ -0.63
USP40-205ENST00000430158 DDIT4LQ96D03 193 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 MPP4Q96JB8 637 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 ZNF300Q96RE9 604 aaPredicted RBP11.09□□□□□ -0.63
USP40-205ENST00000430158 TM9SF2Q99805 663 aa11.09□□□□□ -0.63
USP40-205ENST00000430158 MEPEQ9NQ76 525 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms