RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ZMIZ1Q9ULJ6 1067 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 MRPS33Q9Y291 106 aaKnown RBP12.29□□□□□ -0.44
VPS54-203ENST00000409558 SLC22A31A6NKX4 558 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 IFNGP01579 166 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 ADRB1P08588 477 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 SLC6A6P31641 620 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 RABIFP47224 123 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 EVX1P49640 407 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 CTXN1P60606 82 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 MRPL28Q13084 256 aaKnown RBP12.29□□□□□ -0.44
VPS54-203ENST00000409558 MZT2BQ6NZ67 158 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 SGTBQ96EQ0 304 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 CMC2Q9NRP2 79 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 PCDHGB2Q9Y5G2 931 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 IRGMA1A4Y4 181 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 OR6C68A6NDL8 312 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 WISP1O95388 367 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 ATP1B1P05026 303 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 NR0B1P51843 470 aaKnown RBP12.29□□□□□ -0.44
VPS54-203ENST00000409558 OR1D5P58170 312 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 DGCR2P98153 550 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 ZNF85Q03923 595 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 MGAT2Q10469 447 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 LRRC69Q6ZNQ3 347 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 OR6N2Q8NGY6 317 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 ITPKCQ96DU7 683 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 NXF5Q9H1B4 397 aaKnown RBP12.29□□□□□ -0.44
VPS54-203ENST00000409558 ADGRL4Q9HBW9 690 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 POT1Q9NUX5 634 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 DNAJB12Q9NXW2 375 aaKnown RBP12.29□□□□□ -0.44
VPS54-203ENST00000409558 TICRRQ7Z2Z1 1910 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 TMEM150CB9EJG8 249 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 ARHGEF9O43307 516 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 GIFP27352 417 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 EVI2BP34910 448 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 ADH7P40394 386 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 RPL6Q02878 288 aaKnown RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 TOMM34Q15785 309 aaPredicted RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 UBE2Q1Q7Z7E8 422 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 BCORP1Q8N888 145 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 AUNIPQ9H7T9 357 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 FSCN3Q9NQT6 498 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 RHPN2P1A8MT19 583 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 FOXS1O43638 330 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 RAB38P57729 211 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 CCDC92Q53HC0 331 aaPredicted RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 CCDC157Q569K6 752 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 GDPD1Q8N9F7 314 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 DNAJA4Q8WW22 397 aaPredicted RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 FGF11Q92914 225 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 NANSQ9NR45 359 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 ZNF223Q9UK11 482 aaPredicted RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 KCNJ13O60928 360 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 SMIM10L1P0DMW3 83 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 RAB3BP20337 219 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 FZD5Q13467 585 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 FHL5Q5TD97 284 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 FAM205BPQ63HN1 556 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 VASH1Q7L8A9 365 aaPredicted RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 LNX2Q8N448 690 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 GRPEL2Q8TAA5 225 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 SLC7A6Q92536 515 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 SMIM10Q96HG1 83 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 TRIM2Q9C040 744 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 ZNF576Q9H609 170 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 OR2B3O76000 313 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 SLC35E2P0CK97 266 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 ENDOUP21128 410 aaKnown RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 ACAA2P42765 397 aaKnown RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 GRK6P43250 576 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 TSFMP43897 325 aaKnown RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 JAZF1Q86VZ6 243 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 ARIH2OSQ8N7S6 290 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 KISS1RQ969F8 398 aaPredicted RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 PPP1R14AQ96A00 147 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 ADAD1Q96M93 576 aaKnown RBP12.28□□□□□ -0.44
VPS54-203ENST00000409558 DPYSL5Q9BPU6 564 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 SEMA4CQ9C0C4 833 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 KCNK15Q9H427 330 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 MMP17Q9ULZ9 603 aa12.28□□□□□ -0.44
VPS54-203ENST00000409558 A0A0B4J2E0 115 aa12.27□□□□□ -0.44
VPS54-203ENST00000409558 A0A1B0GX12 115 aa12.27□□□□□ -0.44
VPS54-203ENST00000409558 PRR19A6NJB7 356 aa12.27□□□□□ -0.44
VPS54-203ENST00000409558 EIF1AXP47813 144 aaKnown RBP12.27□□□□□ -0.44
VPS54-203ENST00000409558 GALEQ14376 348 aa12.27□□□□□ -0.44
VPS54-203ENST00000409558 BTBD16Q32M84 506 aa12.27□□□□□ -0.44
VPS54-203ENST00000409558 APOOLQ6UXV4 268 aa12.27□□□□□ -0.44
VPS54-203ENST00000409558 ZNF524Q96C55 264 aa12.27□□□□□ -0.44
VPS54-203ENST00000409558 ERVMER34-1Q9H9K5 563 aa12.27□□□□□ -0.44
VPS54-203ENST00000409558 NOX4Q9NPH5 578 aa12.27□□□□□ -0.44
VPS54-203ENST00000409558 FLVCR2Q9UPI3 526 aa12.27□□□□□ -0.44
VPS54-203ENST00000409558 DCTN6O00399 190 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 FZD7O75084 574 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 NDUFB2O95178 105 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 GPR176Q14439 515 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 GRM7Q14831 915 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 NSDHLQ15738 373 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 NTRK2Q16620 822 aa12.27□□□□□ -0.45
VPS54-203ENST00000409558 MARCH3Q86UD3 253 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms