RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CLIP4Q8N3C7 705 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 TCEANCQ8N8B7 351 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 EXD3Q8N9H8 876 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 MDS2Q8NDY4 140 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 TEX47Q8TBZ9 253 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 FNDC8Q8TC99 324 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 GRHL3Q8TE85 626 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 ZHX1-C8orf76Q96EF9 292 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 TMEM80Q96HE8 168 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 PLEKHA8Q96JA3 519 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 HMG20AQ9NP66 347 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 KCNE5Q9UJ90 142 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 OSGIN1Q9UJX0 560 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 CACNA1GO43497 2377 aa12.21□□□□□ -0.45
LIMS1-204ENST00000409441 SNTNA6NMZ2 147 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 CLDN25C9JDP6 229 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 KIAA0513O60268 411 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 P04436 131 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 SP1P08047 785 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 NGFRP08138 427 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 DBTP11182 482 aaKnown RBP12.21□□□□□ -0.46
LIMS1-204ENST00000409441 FPR3P25089 353 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 EVI2BP34910 448 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 OMPP47874 163 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 RGS6P49758 472 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 MLLT10P55197 1068 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 LSM3P62310 102 aaKnown RBP12.21□□□□□ -0.46
LIMS1-204ENST00000409441 EFNB1P98172 346 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 ZNF91Q05481 1191 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 ZNF141Q15928 474 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 MAPK14Q16539 360 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 TIMM50Q3ZCQ8 353 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 KLHL26Q53HC5 615 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 BICRALQ6AI39 1079 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 SLC27A4Q6P1M0 643 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 APOOLQ6UXV4 268 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 MBOAT2Q6ZWT7 520 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 USP43Q70EL4 1123 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 CLDN22Q8N7P3 220 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 POGLUT1Q8NBL1 392 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 PSD4Q8NDX1 1056 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 KBTBD8Q8NFY9 601 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 SLC41A3Q96GZ6 507 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 SH3YL1Q96HL8 342 aaPredicted RBP12.21□□□□□ -0.46
LIMS1-204ENST00000409441 METTL7AQ9H8H3 244 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 KLHL1Q9NR64 748 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 CTPS2Q9NRF8 586 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 SACM1LQ9NTJ5 587 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 TVP23BQ9NYZ1 205 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 DNAJC27Q9NZQ0 273 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 A3GALT2U3KPV4 340 aa12.21□□□□□ -0.46
LIMS1-204ENST00000409441 USP24Q9UPU5 2620 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 ANKRD33BA6NCL7 494 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 G3V3Y1 287 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 SCDO00767 359 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 FRS3O43559 492 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 FMO6PO60774 539 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 NID1P14543 1247 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 CNR1P21554 472 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 GADD45AP24522 165 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 OPRL1P41146 370 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 SNTA1Q13424 505 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 TMEM44Q2T9K0 475 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 ZNF766Q5HY98 468 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 PDZK1Q5T2W1 519 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 PRAMEF20Q5VT98 475 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 PRICKLE2Q7Z3G6 844 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 GDF7Q7Z4P5 450 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 MARCH3Q86UD3 253 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 KIF18BQ86Y91 864 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 RBMXL3Q8N7X1 1067 aaKnown RBP12.2□□□□□ -0.46
LIMS1-204ENST00000409441 ZNF527Q8NB42 609 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 OSTF1Q92882 214 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 C5orf34Q96MH7 638 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 DACH2Q96NX9 599 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 SLC38A2Q96QD8 506 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 GPA33Q99795 319 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 TSSK6Q9BXA6 273 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 TEX12Q9BXU0 123 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 ANGPTL4Q9BY76 406 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 MFRPQ9BY79 579 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 HES7Q9BYE0 225 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 TBL1XR1Q9BZK7 514 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 RTN4RQ9BZR6 473 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 DCSTAMPQ9H295 470 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 ARMC7Q9H6L4 198 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 PROK2Q9HC23 129 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 AKIP1Q9NQ31 210 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 MRPS18AQ9NVS2 196 aaKnown RBP12.2□□□□□ -0.46
LIMS1-204ENST00000409441 KLRF1Q9NZS2 232 aa12.2□□□□□ -0.46
LIMS1-204ENST00000409441 TRAV17A0A0B4J275 112 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 CENPVL1A0A0U1RR11 272 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 C2orf72A6NCS6 295 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 ALG1L2C9J202 215 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 ERVH48-1M5A8F1 160 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 PRKYO43930 277 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 SFTPCP11686 197 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 ZNF12P17014 697 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 PTGDSP41222 190 aa12.19□□□□□ -0.46
LIMS1-204ENST00000409441 RNF144AP50876 292 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms