RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PTCRAQ6ISU1 281 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SYT13Q7L8C5 426 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 ZNF550Q7Z398 422 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 MCATQ8IVS2 390 aaKnown RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 CNOT9Q92600 299 aaKnown RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 CMC2Q9NRP2 79 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 ZFP57Q9NU63 452 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 C20orf141Q9NUB4 165 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 COA4Q9NYJ1 87 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SLC35A3Q9Y2D2 325 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 PRELID3BQ9Y3B1 194 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SPTY2D1-AS1A0A0U1RR47 76 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 CHP2O43745 196 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 REM1O75628 298 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 KLK3P07288 261 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 F8A1P23610 371 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 MAP2K6P52564 334 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 TAS2R43P59537 309 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 RPL6Q02878 288 aaKnown RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 ASAH1Q13510 395 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 ZSWIM7Q19AV6 140 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 OR7E24Q6IFN5 339 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 ZC3H14Q6PJT7 736 aaKnown RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 METAP1DQ6UB28 335 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 RTL4Q6ZR62 310 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SFTPA2Q8IWL1 248 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 GPALPP1Q8IXQ4 340 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SIRT6Q8N6T7 355 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SLC37A3Q8NCC5 494 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 HLA-CQ95604 372 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 YIPF5Q969M3 257 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 ANKRD9Q96BM1 317 aaPredicted RBP8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SHDQ96IW2 340 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 JAM3Q9BX67 310 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 FOLH1BQ9HBA9 442 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 Q9N2J8 555 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SLC2A4RGQ9NR83 387 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 GSN-AS1Q9NRJ2 163 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 SOHLH2Q9NX45 425 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 KCNE5Q9UJ90 142 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 OR10H1Q9Y4A9 318 aa8.89□□□□□ -0.99
COL6A3-204ENST00000392003 C2orf92A0A1B0GVN3 265 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 A0A1B0GWA3 101 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 A0A1W2PPC4 97 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 BHLHE40O14503 412 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 RNF13O43567 381 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 CELA2BP08218 269 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ZGLP1P0C6A0 271 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 SLC2A2P11168 524 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ST6GAL1P15907 406 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 MYL9P24844 172 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PSMD4P55036 377 aaKnown RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 QPRTQ15274 297 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 TRAM1Q15629 374 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 GLYR1Q49A26 553 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ALG10BQ5I7T1 473 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 CNIH2Q6PI25 160 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 WDR88Q6ZMY6 472 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 UBQLNLQ8IYU4 475 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ZNF485Q8NCK3 441 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 DNAJA4Q8WW22 397 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ACOT12Q8WYK0 555 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ARL5BQ96KC2 179 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 DGAT2Q96PD7 388 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 NEDD4LQ96PU5 975 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PHOX2BQ99453 314 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 FOXQ1Q9C009 403 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 RANGRFQ9HD47 186 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 MKKSQ9NPJ1 570 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PRTFDC1Q9NRG1 225 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 USP36Q9P275 1121 aaKnown RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PCDHGB7Q9Y5F8 929 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PCDHGA5Q9Y5G8 931 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PCDHGA1Q9Y5H4 931 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 FANCMQ8IYD8 2048 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 TRAV27A0A087WT01 109 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 A0A0A6YYC8 382 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 I3L1I5 382 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 GTPBP1O00178 669 aaKnown RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 HPGDSO60760 199 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 SLC19A2O60779 497 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ECDO95905 644 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 CBX7O95931 251 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 DRD5P21918 477 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 GALP22466 123 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 PTAFRP25105 342 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ARL4DP49703 201 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 MGAT2Q10469 447 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ELOCQ15369 112 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ARL9Q6T311 187 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 CLEC2AQ6UVW9 174 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 C5orf46Q6UWT4 87 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 TMEM99Q8N816 258 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 C19orf47Q8N9M1 422 aaKnown RBP8.88□□□□□ -0.99
COL6A3-204ENST00000392003 FAM181AQ8N9Y4 354 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 CHAC2Q8WUX2 184 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 HCN3Q9P1Z3 774 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 POMT2Q9UKY4 750 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 SIGLEC7Q9Y286 467 aa8.88□□□□□ -0.99
COL6A3-204ENST00000392003 ZC3H12DA2A288 527 aaKnown RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms