RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 BAP18Q8IXM2 172 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 FBXO27Q8NI29 283 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 TSEN15Q8WW01 171 aaKnown RBP4.59□□□□□ -1.67
PCDH9-201ENST00000377861 RBPMSQ93062 196 aaKnown RBP4.59□□□□□ -1.67
PCDH9-201ENST00000377861 HHIPQ96QV1 700 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 MS4A8Q9BY19 250 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 SPNS1Q9H2V7 528 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 TBX18O95935 607 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 HLA-HP01893 362 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 PGGHGQ32M88 737 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 SLC6A18Q96N87 628 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 DUXBA0A1W2PPF3 345 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 OLFML2AQ68BL7 652 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 ORAI1Q96D31 301 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 SOX17Q9H6I2 414 aaPredicted RBP4.59□□□□□ -1.67
PCDH9-201ENST00000377861 A0A1W2PQ09 198 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 C2orf78A6NCI8 922 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 SLC25A4P12235 298 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 F2RL1P55085 397 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 FGFBP1Q14512 234 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 AANATQ16613 207 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 Q6ZNB5 142 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 DGLUCYQ7Z3D6 616 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 ZNF679Q8IYX0 411 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 C19orf24Q9BVV8 132 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 RNF39Q9H2S5 420 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 CARS2Q9HA77 564 aaKnown RBP4.59□□□□□ -1.67
PCDH9-201ENST00000377861 J3QRK9 145 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 CST4P01036 141 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 RRASP10301 218 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 CD79BP40259 229 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 CD200P41217 278 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 ATP6V1FQ16864 119 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 RPS4Y2Q8TD47 263 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 CDS1Q92903 461 aa4.59□□□□□ -1.67
PCDH9-201ENST00000377861 OR5H14A6NHG9 310 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 EPHX1P07099 455 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 RPL17P18621 184 aaKnown RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 C21orf33P30042 268 aaPredicted RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 TRBV5-3A0A0A0MS03 114 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 KDM4EB2RXH2 506 aaPredicted RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 SDHAP31040 664 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 GABRA3P34903 492 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 THBS3P49746 956 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 JAG1P78504 1218 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 C22orf42Q6IC83 251 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 KRTCAP2Q8N6L1 136 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 EXOSC8Q96B26 276 aaKnown RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 ZIC5Q96T25 663 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 TMEM233B4DJY2 109 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 SLC10A3P09131 477 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 ELAVL1Q15717 326 aaKnown RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 TM4SF18Q96CE8 201 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 KATNB1Q9BVA0 655 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 B4GALT7Q9UBV7 327 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 TMEFF2Q9UIK5 374 aaPredicted RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 HDGFL3Q9Y3E1 203 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 PTHLHP12272 177 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 MFGE8Q08431 387 aaPredicted RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 MALSU1Q96EH3 234 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 J3QW42 95 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 CLIC3O95833 236 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 FUT1P19526 365 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 TSSK4Q6SA08 328 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 DNAJC14Q6Y2X3 702 aaPredicted RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 CCDC120Q96HB5 630 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 FBXL12Q9NXK8 326 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 FMN2Q9NZ56 1722 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 HRO43593 1189 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 SUB1P53999 127 aaKnown RBP eCLIP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 CLDN15P56746 228 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 CSNK1A1LQ8N752 337 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 F3P13726 295 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 HNRNPA2B1P22626 353 aaKnown RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 ARRB2P32121 409 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 DHODHQ02127 395 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 CST6Q15828 149 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.59□□□□□ -1.68
PCDH9-201ENST00000377861 C7orf61Q8IZ16 206 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 CTDSP1Q9GZU7 261 aa4.59□□□□□ -1.68
PCDH9-201ENST00000377861 H7C417 338 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 ADRA2CP18825 462 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 VAMP2P63027 116 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 RRNAD1Q96FB5 475 aaKnown RBP4.58□□□□□ -1.68
PCDH9-201ENST00000377861 MTFP1Q9UDX5 166 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 YBX2Q9Y2T7 364 aaKnown RBP4.58□□□□□ -1.68
PCDH9-201ENST00000377861 GJB3O75712 270 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 MDGA2Q7Z553 956 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 OR52A5Q9H2C5 316 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 TMED3Q9Y3Q3 217 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 NPIPA5E9PKD4 350 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 SELEP16581 610 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 LDAHQ9H6V9 325 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 NPIPA1Q9UND3 350 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 ST8SIA3O43173 380 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 GATCO43716 136 aaKnown RBP4.58□□□□□ -1.68
PCDH9-201ENST00000377861 ASCL1P50553 236 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 BTN3A2P78410 334 aa4.58□□□□□ -1.68
PCDH9-201ENST00000377861 SOHLH1Q5JUK2 328 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms