RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 OR4K13Q8NH42 304 aa12.63□□□□□ -0.39
USP49-201ENST00000373006 SLC22A8Q8TCC7 542 aa12.63□□□□□ -0.39
USP49-201ENST00000373006 SNX33Q8WV41 574 aa12.63□□□□□ -0.39
USP49-201ENST00000373006 ZNF559Q9BR84 538 aa12.63□□□□□ -0.39
USP49-201ENST00000373006 CD93Q9NPY3 652 aa12.63□□□□□ -0.39
USP49-201ENST00000373006 MEPEQ9NQ76 525 aaPredicted RBP12.63□□□□□ -0.39
USP49-201ENST00000373006 PRDM9Q9NQV7 894 aa12.63□□□□□ -0.39
USP49-201ENST00000373006 KCNK6Q9Y257 313 aa12.63□□□□□ -0.39
USP49-201ENST00000373006 GNB5O14775 395 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 LAMP2P13473 410 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 SRMP19623 302 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 EDNRAP25101 427 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 NDUFS1P28331 727 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 SIRPAP78324 504 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 DPTQ07507 201 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 HLXQ14774 488 aaPredicted RBP12.62□□□□□ -0.39
USP49-201ENST00000373006 FAM69AQ5T7M9 428 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 GLDNQ6ZMI3 551 aaPredicted RBP12.62□□□□□ -0.39
USP49-201ENST00000373006 TEX19Q8NA77 164 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 OR52E2Q8NGJ4 325 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 SMIM19Q96E16 107 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 ARL6Q9H0F7 186 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 SLC6A17Q9H1V8 727 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 SLC6A20Q9NP91 592 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 CA5BQ9Y2D0 317 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 PLEKHM1Q9Y4G2 1056 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 CACNA1CQ13936 2221 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 A0A1B0GUH1 482 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 RAB19A4D1S5 217 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 HIDE1A8MVS5 230 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 SUSD5O60279 629 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 SERPINA3P01011 423 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 UCHL1P09936 223 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 ZNF3P17036 446 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 HSD17B2P37059 387 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 VEGFBP49765 207 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 BAMBIQ13145 260 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 CDK5R1Q15078 307 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 ZIC1Q15915 447 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 TRMT12Q53H54 448 aaKnown RBP12.62□□□□□ -0.39
USP49-201ENST00000373006 HEPHL1Q6MZM0 1159 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 FIGNL1Q6PIW4 674 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 C1orf216Q8TAB5 229 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 FCAMRQ8WWV6 532 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 WNT2BQ93097 391 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 SLC25A38Q96DW6 304 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 SDF2Q99470 211 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 GFI1Q99684 422 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 ADAP2Q9NPF8 381 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 ANKRD10Q9NXR5 420 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 KLHL9Q9P2J3 617 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 KCNE5Q9UJ90 142 aa12.62□□□□□ -0.39
USP49-201ENST00000373006 MDC1Q14676 2089 aaKnown RBP12.62□□□□□ -0.39
USP49-201ENST00000373006 FXYD6-FXYD2A0A087WZ82 144 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 DUXAA6NLW8 204 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 IMPA2O14732 288 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 TO15178 435 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 KRT33AO76009 404 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 ZNF806P0C7X5 589 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 SPTBP11277 2137 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 SLC2A5P22732 501 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 GRPRP30550 384 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 EEF1A1P68104 462 aaKnown RBP12.61□□□□□ -0.39
USP49-201ENST00000373006 C2orf68Q2NKX9 166 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 PLPP4Q5VZY2 271 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 TMPRSS9Q7Z410 1059 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 ZNF614Q8N883 585 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 RELL2Q8NC24 303 aaPredicted RBP12.61□□□□□ -0.39
USP49-201ENST00000373006 OR5M1Q8NGP8 315 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 CXorf40AQ8TE69 158 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 ZNF578Q96N58 590 aaPredicted RBP12.61□□□□□ -0.39
USP49-201ENST00000373006 GINS4Q9BRT9 223 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 GPR174Q9BXC1 333 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 FXYD6Q9H0Q3 95 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 NRIP3Q9NQ35 241 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 SPHK1Q9NYA1 384 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 DOCK9Q9BZ29 2069 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 KIAA1549LQ6ZVL6 1849 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 F5P12259 2224 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 IGLON5A6NGN9 336 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 H3BSH0 61 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 PIN1P1O15428 100 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 CREBL2O60519 120 aaPredicted RBP12.61□□□□□ -0.39
USP49-201ENST00000373006 PRAF2O60831 178 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 LILRB3O75022 631 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 DNAJB6O75190 326 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 MOSPD3O75425 235 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 ZNF254O75437 659 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 C4BPBP20851 252 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 CDK3Q00526 305 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 LGALS3BPQ08380 585 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 RPE65Q16518 533 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 ELP2Q6IA86 826 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 PXYLP1Q8TE99 480 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 TAS2R10Q9NYW0 307 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 PFDN2Q9UHV9 154 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 PLCL2Q9UPR0 1127 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 ERVK-19Q9WJR5 959 aa12.61□□□□□ -0.39
USP49-201ENST00000373006 SNRNP200O75643 2136 aaKnown RBP12.61□□□□□ -0.39
USP49-201ENST00000373006 TRBV23-1A0A0A0MS06 115 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms