RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 MKLN1Q9UL63 735 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 LIPT1Q9Y234 373 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ANGPT4Q9Y264 503 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 CHST2Q9Y4C5 530 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 AP4S1Q9Y587 144 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 NINQ8N4C6 2090 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 DSPPQ9NZW4 1301 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TRBV11-1A0A0K0K1C0 115 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 C2orf92A0A1B0GVN3 265 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 A0A1W2PQ72 361 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 FRG2CA6NGY1 282 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 LIPT2A6NK58 231 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 SAC3D1A6NKF1 404 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ENO4A6NNW6 628 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 NPIPB9F8W1W9 429 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 STMND1H3BQB6 276 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 LDLRAD4O15165 306 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 SUV39H1O43463 412 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 AKAP8O43823 692 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 BCAS1O75363 584 aaPredicted RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 NADKO95544 446 aaPredicted RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 STAMBPO95630 424 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ZNF682O95780 498 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 BAG2O95816 211 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 GPIP06744 558 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 CD63P08962 238 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ETS2P15036 469 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ATP6V1B1P15313 513 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 UQCRC1P31930 480 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 OTX2P32243 289 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 PIGAP37287 484 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 PSMB10P40306 273 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 PSMD7P51665 324 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 CRISP3P54108 245 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 RPS15P62841 145 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 KCNJ10P78508 379 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 Q0VFX4 171 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TBC1D25Q3MII6 688 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ZNF766Q5HY98 468 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ATAD3BQ5T9A4 648 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 PRAMEF8Q5VWM4 474 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 PRAMEF7Q5VXH5 474 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TMEM108Q6UXF1 575 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 Q6ZSN1 163 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 NDUFAF7Q7L592 441 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 AMIGO2Q86SJ2 522 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 PATL1Q86TB9 770 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 VRK2Q86Y07 508 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 RBM45Q8IUH3 476 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 LACC1Q8IV20 430 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 SLC30A8Q8IWU4 369 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 CLIP4Q8N3C7 705 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 OR8H1Q8NGG4 311 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 OR4D11Q8NGI4 311 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 BBS10Q8TAM1 723 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ELP5Q8TE02 316 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 STMN2Q93045 179 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TPD52L3Q96J77 140 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 RNF145Q96MT1 663 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 COL21A1Q96P44 957 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TRIB1Q96RU8 372 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 LPAR4Q99677 370 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 DOHHQ9BU89 302 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 CHID1Q9BWS9 393 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 GPR87Q9BY21 358 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ZNF350Q9GZX5 532 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 MTHFD2LQ9H903 347 aaPredicted RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 EXD2Q9NVH0 621 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 FLRT3Q9NZU0 649 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 STX18Q9P2W9 335 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 RIMS3Q9UJD0 308 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 BLOC1S6Q9UL45 172 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 AURKCQ9UQB9 309 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TMEM247A6NEH6 219 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 CLDN24A6NM45 220 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 OR6C76A6NM76 312 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 C21orf140B9A014 251 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 TO15178 435 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 KIAA0513O60268 411 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 STX11O75558 287 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 DIRAS1O95057 198 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 IGHEP01854 428 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 GUSBP08236 651 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 LIFP15018 202 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 WT1P19544 449 aaPredicted RBP3.23□□□□□ -1.89
MCF2-202ENST00000370573 RPS4Y1P22090 263 aaKnown RBP3.23□□□□□ -1.89
MCF2-202ENST00000370573 THBS4P35443 961 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 GCKP35557 465 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 MAGEA2P43356 314 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 OR1E2P47887 323 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 RFX3P48380 749 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 NR0B1P51843 470 aaKnown RBP3.23□□□□□ -1.89
MCF2-202ENST00000370573 CDH15P55291 814 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 VLDLRP98155 873 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 ROR2Q01974 943 aaKnown RBP3.23□□□□□ -1.89
MCF2-202ENST00000370573 CHRNB3Q05901 458 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 SLC34A1Q06495 639 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 DYNC1I2Q13409 638 aaKnown RBP3.23□□□□□ -1.89
MCF2-202ENST00000370573 GNA13Q14344 377 aa3.23□□□□□ -1.89
MCF2-202ENST00000370573 ZNHIT3Q15649 155 aaPredicted RBP3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms