RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 FAM205BPQ63HN1 556 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 ARMC6Q6NXE6 501 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 BTN2A1Q7KYR7 527 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 LUZP2Q86TE4 346 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 SIAH3Q8IW03 269 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 ZNF595Q8IYB9 648 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 CADM2Q8N3J6 435 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 NPEPL1Q8NDH3 523 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 OR13C5Q8NGS8 318 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 SMAP2Q8WU79 429 aaPredicted RBP13.12□□□□□ -0.31
CD48-201ENST00000368045 SMIM4Q8WVI0 70 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 RIT1Q92963 219 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 DDOQ99489 341 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 MRI1Q9BV20 369 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 CACNG6Q9BXT2 260 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 PLEKHA1Q9HB21 404 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 POMT2Q9UKY4 750 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 YBX2Q9Y2T7 364 aaKnown RBP13.12□□□□□ -0.31
CD48-201ENST00000368045 SCN3AQ9NY46 2000 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 A0A1B0GVI7 797 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 MCIDASD6RGH6 385 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 ERVH48-1M5A8F1 160 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 FABP7O15540 132 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 AKR7A2O43488 359 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 DRD1P21728 446 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 PRPS1P60891 318 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 DGCR2P98153 550 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 PRTGQ2VWP7 1150 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 RFLNBQ8N5W9 214 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 OR9A4Q8NGU2 314 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 HSD17B8Q92506 261 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 PHF21AQ96BD5 680 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 RBM18Q96H35 190 aaKnown RBP13.11□□□□□ -0.31
CD48-201ENST00000368045 CAPN10Q9HC96 672 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 GNG8Q9UK08 70 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 SLC6A5Q9Y345 797 aa13.11□□□□□ -0.31
CD48-201ENST00000368045 PCDHGA9Q9Y5G4 932 aaKnown RBP13.11□□□□□ -0.31
CD48-201ENST00000368045 ATG2AQ2TAZ0 1938 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 A0A1B0GVC2 190 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 SERINC4A6NH21 518 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 A6NIN4 97 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 C10orf142B7Z368 130 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 LINC01565O15544 149 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 CD3GP09693 182 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 SPI1P17947 270 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 RPL4P36578 427 aaKnown RBP13.1□□□□□ -0.31
CD48-201ENST00000368045 NAA10P41227 235 aaPredicted RBP13.1□□□□□ -0.31
CD48-201ENST00000368045 TPMTP51580 245 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 RPS4XP62701 263 aaKnown RBP13.1□□□□□ -0.31
CD48-201ENST00000368045 RPL6Q02878 288 aaKnown RBP13.1□□□□□ -0.31
CD48-201ENST00000368045 STX4Q12846 297 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 KLF9Q13886 244 aaPredicted RBP13.1□□□□□ -0.31
CD48-201ENST00000368045 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.1□□□□□ -0.31
CD48-201ENST00000368045 FAM69AQ5T7M9 428 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 SLC6A19Q695T7 634 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 ZC3H14Q6PJT7 736 aaKnown RBP13.1□□□□□ -0.31
CD48-201ENST00000368045 NPSR1Q6W5P4 371 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 FGD2Q7Z6J4 655 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 SHISA5Q8N114 240 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 ARL14Q8N4G2 192 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 EID2Q8N6I1 236 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 DTX3Q8N9I9 347 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 ZNF671Q8TAW3 534 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 SLC37A2Q8TED4 501 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 PATE1Q8WXA2 126 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 HGDQ93099 445 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 GPR137Q96N19 417 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 UCKL1Q9NWZ5 548 aa13.1□□□□□ -0.31
CD48-201ENST00000368045 GOLGA4Q13439 2230 aaKnown RBP13.1□□□□□ -0.31
CD48-201ENST00000368045 TRAV6A0A075B6T7 132 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 TRABD2BA6NFA1 517 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 PRAMEF26H0Y7S4 382 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 SMLR1H3BR10 107 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 TNFRSF10AO00220 468 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 GLCEO94923 617 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 CSTAP01040 98 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 H2AFB2P0C5Z0 115 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 APEHP13798 732 aaKnown RBP13.09□□□□□ -0.31
CD48-201ENST00000368045 GIFP27352 417 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 SRP9P49458 86 aaKnown RBP13.09□□□□□ -0.31
CD48-201ENST00000368045 SLC25A1P53007 311 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 GPLD1P80108 840 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 DBPQ10586 325 aaPredicted RBP13.09□□□□□ -0.31
CD48-201ENST00000368045 KCTD20Q7Z5Y7 419 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 SLC35F3Q8IY50 421 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 RCBTB1Q8NDN9 531 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 OR13H1Q8NG92 308 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 OR4N2Q8NGD1 307 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 OR56B4Q8NH76 319 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 ZNF431Q8TF32 576 aaPredicted RBP13.09□□□□□ -0.31
CD48-201ENST00000368045 HSPA12BQ96MM6 686 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 ZFP3Q96NJ6 502 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 DGAT2Q96PD7 388 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 OR14A2Q96R54 314 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 STARD5Q9NSY2 213 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 B3GNT2Q9NY97 397 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 NAP1L6A6NFF2 107 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 AIPO00170 330 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 CLDN4O14493 209 aa13.09□□□□□ -0.31
CD48-201ENST00000368045 FOXS1O43638 330 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms