RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MRPL2Q5T653 305 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 LIPIQ6XZB0 460 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 CMTM1Q8IZ96 169 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 OR6T1Q8NGN1 323 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 LIN37Q96GY3 246 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 NOX4Q9NPH5 578 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 NPFFR2Q9Y5X5 522 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 BRINP1O60477 761 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 NSDHLQ15738 373 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 UBTD2Q8WUN7 234 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 HAS2Q92819 552 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 HHIPL1Q96JK4 782 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 MYADML2A6NDP7 307 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 PTBP1P26599 531 aaKnown RBP eCLIP18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 KCNJ5P48544 419 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 STK11Q15831 433 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 HIST2H3PS2Q5TEC6 136 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 ZNF740Q8NDX6 193 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 OR1S1Q8NH92 325 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 ZDHHC12Q96GR4 267 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 TNFRSF12AQ9NP84 129 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC2A4RGQ9NR83 387 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 ZNF337Q9Y3M9 751 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 TMEM269A0A1B0GVZ9 245 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 ZNF43P17038 809 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 IMPA1P29218 277 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 ZMAT1Q5H9K5 638 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 NLRP8Q86W28 1048 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 ZNF680Q8NEM1 530 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 BBS1Q8NFJ9 593 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 TERB2Q8NHR7 220 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 HRH3Q9Y5N1 445 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 MAKP20794 623 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 ARRB1P49407 418 aaPredicted RBP18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 PDE7AQ13946 482 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 CST6Q15828 149 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 H3F3CQ6NXT2 135 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 STEAP1BQ6NZ63 245 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 C17orf107Q6ZR85 190 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 POC1BQ8TC44 478 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 TRMT2BQ96GJ1 504 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 LINC00597Q9H2U6 94 aa18.19■□□□□ 0.5
CCDC88B-202ENST00000356786 F5H5K5 113 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 TRIM23P36406 574 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 GBX1Q14549 363 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 SYT14P1Q58G82 188 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 EOGTQ5NDL2 527 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 EEF1A1P5Q5VTE0 462 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 PRAMEF8Q5VWM4 474 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 PRAMEF7Q5VXH5 474 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 ABHD12BQ7Z5M8 362 aaPredicted RBP18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 BTLAQ7Z6A9 289 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 HINT2Q9BX68 163 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 CDCA4Q9BXL8 241 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 FAM212BQ9NTI7 297 aaPredicted RBP18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 A0A1B0GUL6 1792 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 TAPBPO15533 448 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 OR2T1O43869 369 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 MMP11P24347 488 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 ETV6P41212 452 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC19A1P41440 591 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 TNFRSF13CQ96RJ3 184 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 TMEM38AQ9H6F2 299 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 EHFQ9NZC4 300 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 LHX3Q9UBR4 397 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 ARID1AO14497 2285 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 MAST2Q6P0Q8 1798 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 TCRBV5S2A0A599 114 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 ELK1P19419 428 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 HNRNPKP61978 463 aaKnown RBP eCLIP18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 ACY1Q03154 408 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 PLA2G7Q13093 441 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 EBPQ15125 230 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 SLCO4C1Q6ZQN7 724 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 TMUB2Q71RG4 321 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 SSX9Q7RTT3 188 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 RNF113BQ8IZP6 322 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC17A9Q9BYT1 436 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 ZBTB42B2RXF5 422 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 SURF4O15260 269 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 F13BP05160 661 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 HEPHL1Q6MZM0 1159 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 PAQR6Q6TCH4 344 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 TRAPPC6BQ86SZ2 158 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 DHRS9Q9BPW9 319 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 TMEM43Q9BTV4 400 aa18.18■□□□□ 0.5
CCDC88B-202ENST00000356786 H3BML4 177 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 FASLGP48023 281 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 PRLHRP49683 370 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 VASPP50552 380 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 YIF1BQ5BJH7 314 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 MBOAT2Q6ZWT7 520 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 UEVLDQ8IX04 471 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 YIPF6Q96EC8 236 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 PITHD1Q9GZP4 211 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 SMCO4Q9NRQ5 59 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 MYH9P35579 1960 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 TNRC6CQ9HCJ0 1690 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 A8MVJ9 347 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 HOXC11O43248 304 aaPredicted RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms