RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ALPK2Q86TB3 2170 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 BLACEA4D250 179 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 LILRA5A6NI73 299 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 C17orf105B2RV13 164 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 SELENOFO60613 162 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 MST1P26927 711 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 CD38P28907 300 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 PSMD4P55036 377 aaKnown RBP14.13□□□□□ -0.15
UPF3B-202ENST00000345865 RPS4XP62701 263 aaKnown RBP14.13□□□□□ -0.15
UPF3B-202ENST00000345865 ERVK-25P63136 954 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 POU4F2Q12837 409 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 GGTLC2Q14390 218 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 TMEM53Q6P2H8 277 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 PAMR1Q6UXH9 720 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 SLC43A2Q8N370 569 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 FAM71CQ8NEG0 241 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.13□□□□□ -0.15
UPF3B-202ENST00000345865 SMAD5Q99717 465 aaKnown RBP14.13□□□□□ -0.15
UPF3B-202ENST00000345865 LMAN1LQ9HAT1 526 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 LANCL2Q9NS86 450 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 DDX28Q9NUL7 540 aaKnown RBP14.13□□□□□ -0.15
UPF3B-202ENST00000345865 NOX1Q9Y5S8 564 aa14.13□□□□□ -0.15
UPF3B-202ENST00000345865 A8MUA0 341 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 OGG1O15527 345 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 OR7A10O76100 309 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 OR2T7P0C7T2 308 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 EFNA3P52797 238 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 RPS11P62280 158 aaKnown RBP eCLIP14.12□□□□□ -0.15
UPF3B-202ENST00000345865 QPRTQ15274 297 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 TRAM1Q15629 374 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 PRAMEF17Q5VTA0 474 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 DPY19L2P2Q6ZN68 376 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 LRRC28Q86X40 367 aaPredicted RBP14.12□□□□□ -0.15
UPF3B-202ENST00000345865 C17orf82Q86X59 251 aaPredicted RBP14.12□□□□□ -0.15
UPF3B-202ENST00000345865 OR2T27Q8NH04 317 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 ADAMTS18Q8TE60 1221 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 UBASH3BQ8TF42 649 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 ZNF578Q96N58 590 aaPredicted RBP14.12□□□□□ -0.15
UPF3B-202ENST00000345865 CNN2Q99439 309 aaKnown RBP14.12□□□□□ -0.15
UPF3B-202ENST00000345865 WACQ9BTA9 647 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 GMEB2Q9UKD1 530 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 ADAM30Q9UKF2 790 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 ZNF346Q9UL40 294 aaKnown RBP14.12□□□□□ -0.15
UPF3B-202ENST00000345865 SPAG17Q6Q759 2223 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 A0A0B4J203 849 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 FITM1A5D6W6 292 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 SDC3O75056 442 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 TRAPPC2P0DI81 140 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 TRAPPC2BP0DI82 140 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 SPI1P17947 270 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 NUDT1P36639 197 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 OR1D4P47884 311 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 DIO1P49895 249 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 AGFG1P52594 562 aaKnown RBP14.12□□□□□ -0.15
UPF3B-202ENST00000345865 SLC37A1P57057 533 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 CDK5R1Q15078 307 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 TATDN3Q17R31 274 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 ZSWIM7Q19AV6 140 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 CDONQ4KMG0 1287 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 PLET1Q6UQ28 207 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 GKN2Q86XP6 184 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 SLC35F2Q8IXU6 374 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 OR5H6Q8NGV6 325 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 THAP4Q8WY91 577 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 MOGAT1Q96PD6 335 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 NMNAT2Q9BZQ4 307 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 RTN4RQ9BZR6 473 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 NXF5Q9H1B4 397 aaKnown RBP14.12□□□□□ -0.15
UPF3B-202ENST00000345865 UCK1Q9HA47 277 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 PDE7BQ9NP56 450 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 KLHL21Q9UJP4 597 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 BOLA1Q9Y3E2 137 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 ZNF337Q9Y3M9 751 aa14.12□□□□□ -0.15
UPF3B-202ENST00000345865 TLCD2A6NGC4 264 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 METTL12A8MUP2 240 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 FAM171A2A8MVW0 826 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 PRR32B1ATL7 298 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 IDSB3KWA1 339 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 H3BMH7 237 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 PRKAR1AP10644 381 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 ALAS2P22557 587 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 CD27P26842 260 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 EGR4Q05215 589 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 SKP2Q13309 424 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 ZFP69Q49AA0 526 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 CEP78Q5JTW2 689 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 TPRA1Q86W33 373 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 OR4D9Q8NGE8 314 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 OR14A16Q8NHC5 309 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 TSLPQ969D9 159 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 KCTD12Q96CX2 325 aaKnown RBP14.11□□□□□ -0.15
UPF3B-202ENST00000345865 SMIM19Q96E16 107 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 ABHD1Q96SE0 405 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 PDCD1LG2Q9BQ51 273 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 TTYH2Q9BSA4 534 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 PNO1Q9NRX1 252 aaKnown RBP14.11□□□□□ -0.15
UPF3B-202ENST00000345865 ACOXLQ9NUZ1 547 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 UCKL1Q9NWZ5 548 aa14.11□□□□□ -0.15
UPF3B-202ENST00000345865 FAM240BA0A1B0GVZ2 78 aa14.1□□□□□ -0.15
UPF3B-202ENST00000345865 H0YIG0 161 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms