RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 AGRPO00253 132 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 HEXBP07686 556 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 PRG2P13727 222 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 CTRB1P17538 263 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 LCN1P31025 176 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 INPP1P49441 399 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 EFNA3P52797 238 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 GALK2Q01415 458 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 TSPAN31Q12999 210 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 MAB21L1Q13394 359 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 NNATQ16517 81 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 PLA2G2CQ5R387 149 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 HACD4Q5VWC8 232 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 HLA-DQA1Q5Y7H0 255 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 CTRB2Q6GPI1 263 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 TCEAL6Q6IPX3 200 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 ZNF613Q6PF04 617 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 MBOAT2Q6ZWT7 520 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 ZNF550Q7Z398 422 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 PRICKLE2Q7Z3G6 844 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 NKAIN4Q8IVV8 208 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 ELMOD2Q8IZ81 293 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 RNF113BQ8IZP6 322 aaKnown RBP11.76□□□□□ -0.53
CLK3-201ENST00000345005 TCEANCQ8N8B7 351 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 ZSCAN1Q8NBB4 408 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 OR52I1Q8NGK6 324 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 OR1N1Q8NGS0 311 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 UBASH3BQ8TF42 649 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 CNOT9Q92600 299 aaKnown RBP11.76□□□□□ -0.53
CLK3-201ENST00000345005 TCEAL3Q969E4 200 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 RFKQ969G6 155 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 ADIPOR1Q96A54 375 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 HYLS1Q96M11 299 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 SOSTQ9BQB4 213 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 TRIM2Q9C040 744 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 MIXL1Q9H2W2 232 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 CLEC2DQ9UHP7 191 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 NUP50Q9UKX7 468 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 SLC7A7Q9UM01 511 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 ZNF318Q5VUA4 2279 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 C2orf92A0A1B0GVN3 265 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 FAM240BA0A1B0GVZ2 78 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 EFCAB7A8K855 629 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 PRODHO43272 600 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 PRKYO43930 277 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 ZNF780AO75290 641 aaPredicted RBP11.76□□□□□ -0.53
CLK3-201ENST00000345005 IL33O95760 270 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 THY1P04216 161 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 TP53P04637 393 aaPredicted RBP11.76□□□□□ -0.53
CLK3-201ENST00000345005 AZGP1P25311 298 aaKnown RBP11.76□□□□□ -0.53
CLK3-201ENST00000345005 KIR2DL3P43628 341 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 CLDN20P56880 219 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 CTAG1AP78358 180 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 ZMAT1Q5H9K5 638 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 ZNF385CQ66K41 422 aaPredicted RBP11.76□□□□□ -0.53
CLK3-201ENST00000345005 CD200R1LQ6Q8B3 271 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 SLC29A4Q7RTT9 530 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 HDDC2Q7Z4H3 204 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 ZNF527Q8NB42 609 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 C1GALT1C1Q96EU7 318 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 SLC38A2Q96QD8 506 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 MARVELD1Q9BSK0 173 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 NXF5Q9H1B4 397 aaKnown RBP11.76□□□□□ -0.53
CLK3-201ENST00000345005 IRF2BPLQ9H1B7 796 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 UBQLN4Q9NRR5 601 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 POLHQ9Y253 713 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 SPIN1Q9Y657 262 aaPredicted RBP11.76□□□□□ -0.53
CLK3-201ENST00000345005 KIF26BQ2KJY2 2108 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 SERINC4A6NH21 518 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 M0R129 80 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 PLA2G10O15496 165 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 TLX2O43763 284 aaPredicted RBP11.75□□□□□ -0.53
CLK3-201ENST00000345005 SOX14O95416 240 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 HLA-DPB1P04440 258 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 ADRA2AP08913 450 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 HTR2AP28223 471 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 STAT5AP42229 794 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 OMPP47874 163 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 GIPRP48546 466 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 CDK5Q00535 292 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 MC2RQ01718 297 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 ACSM1Q08AH1 577 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 TATDN3Q17R31 274 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 CRTC2Q53ET0 693 aaPredicted RBP11.75□□□□□ -0.53
CLK3-201ENST00000345005 CEP78Q5JTW2 689 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 C22orf42Q6IC83 251 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 ZNF782Q6ZMW2 699 aaPredicted RBP11.75□□□□□ -0.53
CLK3-201ENST00000345005 ZNF440Q8IYI8 595 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 Q8N402 240 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 YIPF7Q8N8F6 280 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 DNAJA4Q8WW22 397 aaPredicted RBP11.75□□□□□ -0.53
CLK3-201ENST00000345005 METTL21AQ8WXB1 218 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 ATOH1Q92858 354 aaPredicted RBP11.75□□□□□ -0.53
CLK3-201ENST00000345005 CREB3L1Q96BA8 519 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 OTULINQ96BN8 352 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 HS6ST2Q96MM7 605 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 APMAPQ9HDC9 416 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 ATP13A2Q9NQ11 1180 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 DNAJB12Q9NXW2 375 aaKnown RBP11.75□□□□□ -0.53
CLK3-201ENST00000345005 TVP23BQ9NYZ1 205 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms