RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PCDHAC1Q9H158 963 aa14.19□□□□□ -0.14
CCDC28A-201ENST00000332797 RPS6KA6Q9UK32 745 aa14.19□□□□□ -0.14
CCDC28A-201ENST00000332797 TRAPPC4Q9Y296 219 aa14.19□□□□□ -0.14
CCDC28A-201ENST00000332797 EMC9Q9Y3B6 208 aa14.19□□□□□ -0.14
CCDC28A-201ENST00000332797 PTPN13Q12923 2485 aa14.19□□□□□ -0.14
CCDC28A-201ENST00000332797 TRAPPC13A5PLN9 417 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 ARPC2O15144 300 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 DNPH1O43598 174 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 CHP2O43745 196 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 SS18L1O75177 396 aaPredicted RBP14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 SMNDC1O75940 238 aaKnown RBP eCLIP14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 PRKD3O94806 890 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 AHSA1O95433 338 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 GPIP06744 558 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 FPR1P21462 350 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 KIR2DL2P43627 348 aaPredicted RBP14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 ASCL1P50553 236 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 TAS2R41P59536 307 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 SLC35A1P78382 337 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 CBX1P83916 185 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 EGR4Q05215 589 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 OR7A5Q15622 319 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 SPATS1Q496A3 300 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 IFI44LQ53G44 452 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 EEF1A1P5Q5VTE0 462 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 FKBP9P1Q75LS8 142 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 FAM214BQ7L5A3 538 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 P3H2Q8IVL5 708 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 SLC43A2Q8N370 569 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 GEMIN6Q8WXD5 167 aaKnown RBP14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 KTI12Q96EK9 354 aaPredicted RBP14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 TAPBPLQ9BX59 468 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 C1orf21Q9H246 121 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 GLRX2Q9NS18 164 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 TAS2R1Q9NYW7 299 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 SLC7A7Q9UM01 511 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 SNX13Q9Y5W8 968 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 HECTD1Q9ULT8 2610 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 IGKV1D-42A0A075B6H8 117 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 A0A087WUJ7 227 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 LIPT2A6NK58 231 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 C19orf84I3L1E1 186 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 CYTIPO60759 359 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 NPIPB7O75200 414 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 THY1P04216 161 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 IFNW1P05000 195 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 COL8A1P27658 744 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 RPS5P46782 204 aaKnown RBP14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 TFF3Q07654 80 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 RASGEF1BQ0VAM2 473 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 GUSBP1Q15486 140 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 FXNQ16595 210 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 LUZP2Q86TE4 346 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 ARHGAP24Q8N264 748 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 STARD4Q96DR4 205 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 SLC41A3Q96GZ6 507 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 PIGMQ9H3S5 423 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 GORASP2Q9H8Y8 452 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 KLHL9Q9P2J3 617 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 KLHL13Q9P2N7 655 aa14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 SAMD4AQ9UPU9 718 aaKnown RBP14.18□□□□□ -0.14
CCDC28A-201ENST00000332797 SPTBN1Q01082 2364 aaKnown RBP14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 ZNF814B7Z6K7 855 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 EIF1BO60739 113 aaKnown RBP14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 PDE5AO76074 875 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 LYPD3O95274 346 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 AGTR1P30556 359 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 TMEM201Q5SNT2 666 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 HIST2H2BCQ6DN03 193 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 ABLIM2Q6H8Q1 611 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 C5orf46Q6UWT4 87 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 GDF7Q7Z4P5 450 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 BTLAQ7Z6A9 289 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 CCDC103Q8IW40 242 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 TUSC5Q8IXB3 177 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 OR6K3Q8NGY3 331 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 PIGXQ8TBF5 258 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 SLC25A36Q96CQ1 311 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 NSMCE2Q96MF7 247 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 PSD2Q9BQI7 771 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 NAA11Q9BSU3 229 aaPredicted RBP14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 PTDSS2Q9BVG9 487 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 AMBRA1Q9C0C7 1298 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 POLR2J2Q9GZM3 115 aaKnown RBP14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 POLR2J3Q9H1A7 115 aaKnown RBP14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 OPN3Q9H1Y3 402 aaPredicted RBP14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 C12orf49Q9H741 205 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 CHST11Q9NPF2 352 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 DCAF13Q9NV06 445 aaKnown RBP14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 PRPF19Q9UMS4 504 aaKnown RBP14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 PROCRQ9UNN8 238 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 V9GYQ6 96 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 ICE1Q9Y2F5 2266 aa14.17□□□□□ -0.14
CCDC28A-201ENST00000332797 CACNA1CQ13936 2221 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 TRAV36DV7A0A075B6V5 113 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 GYG2O15488 501 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 RAMP1O60894 148 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 AKR7A3O95154 331 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 OR5F1O95221 314 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 GTF2E2P29084 291 aaKnown RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms