RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 MBOAT2Q6ZWT7 520 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 TMUB2Q71RG4 321 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 NDUFAF7Q7L592 441 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 SMIM14Q96QK8 99 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 CSNK1G1Q9HCP0 422 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 SLAMF7Q9NQ25 335 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 CCDC85CA6NKD9 419 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 EDIL3O43854 480 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 NME2P22392 152 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 SNRPGP62308 76 aaKnown RBP16.17■□□□□ 0.18
SYNPO-201ENST00000307662 SLC35A2P78381 396 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 CNN3Q15417 329 aaKnown RBP16.17■□□□□ 0.18
SYNPO-201ENST00000307662 DEFB110Q30KQ9 67 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 GDPD3Q7L5L3 318 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 TECPR1Q7Z6L1 1165 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 FOXJ1Q92949 421 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 SDHAF2Q9NX18 166 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 RGPD5Q99666 1765 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 GJB3O75712 270 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 CYBAP13498 195 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 JUNDP17535 347 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 RGRP47804 291 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 EBPQ15125 230 aaKnown RBP16.17■□□□□ 0.18
SYNPO-201ENST00000307662 MORN1Q5T089 497 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 WBP2NLQ6ICG8 309 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 BORCS7Q96B45 105 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 MACROD1Q9BQ69 325 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 APOBEC3BQ9UH17 382 aaKnown RBP16.17■□□□□ 0.18
SYNPO-201ENST00000307662 HHEXQ03014 270 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 VASNQ6EMK4 673 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 DPY19L4Q7Z388 723 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 SLC30A7Q8NEW0 376 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 OR52N1Q8NH53 320 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 MBOAT4Q96T53 435 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 CLEC2DQ9UHP7 191 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 ETV7Q9Y603 341 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 NUP98P52948 1817 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 C17orf105B2RV13 164 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 HHLA1C9JL84 531 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 LDB3O75112 727 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 OR8G3PP0DMU2 310 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 RAB4AP20338 218 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 NUDT1P36639 197 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 CCR9P51686 369 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 CHRNEQ04844 493 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 CDC20Q12834 499 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 OR7E24Q6IFN5 339 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 C1orf123Q9NWV4 160 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 ADAM29Q9UKF5 820 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 CNR1P21554 472 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 PRLHRP49683 370 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 ERVFC1P60507 584 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 RAB33AQ14088 237 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 Q499Y3 187 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 ZFP82Q8N141 532 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 RTP3Q9BQQ7 232 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 OR10A5Q9H207 317 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 OR10A2Q9H208 303 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 SERTAD4Q9NUC0 356 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 DZANK1Q9NVP4 752 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.16■□□□□ 0.18
SYNPO-201ENST00000307662 SEC14L5O43304 696 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 ATP1B1P05026 303 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 ERVK-16P61578 105 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 MFGE8Q08431 387 aaPredicted RBP16.16■□□□□ 0.18
SYNPO-201ENST00000307662 RAB30Q15771 203 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 EXOSC6Q5RKV6 272 aaKnown RBP16.16■□□□□ 0.18
SYNPO-201ENST00000307662 ZIC5Q96T25 663 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 ENTPD2Q9Y5L3 495 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 USP3Q9Y6I4 520 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 STMND1H3BQB6 276 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 NUDT21O43809 227 aaKnown RBP16.16■□□□□ 0.18
SYNPO-201ENST00000307662 SIX6O95475 246 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 MAGEB1P43366 347 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 TANGO2Q6ICL3 276 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 L3MBTL4Q8NA19 623 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 NOX4Q9NPH5 578 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 VSX1Q9NZR4 365 aaPredicted RBP16.16■□□□□ 0.18
SYNPO-201ENST00000307662 TP53TG5Q9Y2B4 290 aa16.16■□□□□ 0.18
SYNPO-201ENST00000307662 UBR2Q8IWV8 1755 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 H3BML4 177 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 HTR2CP28335 458 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 MSX1P28360 303 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 SERPINF1P36955 418 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 EXOSC7Q15024 291 aaKnown RBP16.15■□□□□ 0.18
SYNPO-201ENST00000307662 MPEG1Q2M385 716 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 MRPL2Q5T653 305 aaKnown RBP16.15■□□□□ 0.18
SYNPO-201ENST00000307662 NANOGP1Q8N7R0 232 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 DNAAF1Q8NEP3 725 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 OR4Q3Q8NH05 313 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 SDSLQ96GA7 329 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 GCM1Q9NP62 436 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 GJE1A6NN92 205 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 SERPINA2P20848 420 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 KCNJ10P78508 379 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 OR7A5Q15622 319 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 OR10K2Q6IF99 312 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 STEAP1BQ6NZ63 245 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 OR6T1Q8NGN1 323 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 LINC01599Q8WXQ3 324 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms