RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 LSSP48449 732 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SMAD3P84022 425 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 CPNE8Q86YQ8 564 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLCO4A1Q96BD0 722 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ACTR3CQ9C0K3 210 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 FBXL3Q9UKT7 428 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 LOC100289279A0A1B0GTE1 492 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 FOXE1O00358 373 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 VTNP04004 478 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 GJB1P08034 283 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ANXA7P20073 488 aaKnown RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLC6A1P30531 599 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 OR4D1Q15615 310 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 SLC25A30Q5SVS4 291 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 OR2AK2Q8NG84 335 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF668Q96K58 619 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-220ENST00000641603 PDE7BQ9NP56 450 aa4.37□□□□□ -1.71
SCN1A-220ENST00000641603 A0A1W2PQH9 124 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SFTA3P0C7M3 94 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ZBTB48P10074 688 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 DTYMKP23919 212 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 IL12BP29460 328 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 PPM1AP35813 382 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 KIR2DL3P43628 341 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 DGKZQ13574 1117 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM65Q6PI78 240 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 C2orf69Q8N8R5 385 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR13C8Q8NGS7 320 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR9A1PQ8NGU1 263 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CD200R1Q8TD46 325 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CMKLR1Q99788 373 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 AMBRA1Q9C0C7 1298 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 IL21RQ9HBE5 538 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 RAB22AQ9UL26 194 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 KDM3BQ7LBC6 1761 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 GON4LQ3T8J9 2241 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 MFNGO00587 321 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SCDO00767 359 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ACRV1P26436 265 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 VIPR1P32241 457 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 NOVP48745 357 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 POLR2HP52434 150 aaKnown RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 MLLT10P55197 1068 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 RPS25P62851 125 aaKnown RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 LTB4RQ15722 352 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CTU2Q2VPK5 515 aaKnown RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 DRAM2Q6UX65 266 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF467Q7Z7K2 595 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ARRDC1Q8N5I2 433 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 DCBLD1Q8N8Z6 715 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 LGALS14Q8TCE9 139 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SCLYQ96I15 445 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ATG10Q9H0Y0 220 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CTSFQ9UBX1 484 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 GPSM3Q9Y4H4 160 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 TJP1Q07157 1748 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 MAN2B1O00754 1011 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 AKR7A2O43488 359 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 HLA-DQB1P01920 261 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 GABRA1P14867 456 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 THBS2P35442 1172 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 GLYR1Q49A26 553 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 UBE3DQ7Z6J8 389 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 LGI3Q8N145 548 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 KRTCAP2Q8N6L1 136 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 THEM6Q8WUY1 208 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SUSD6Q92537 303 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 TANKQ92844 425 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SCN4AP35499 1836 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR5H14A6NHG9 310 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 POM121CA8CG34 1229 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 EDNRBP24530 442 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 WEE1P30291 646 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CSF2RBP32927 897 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ERVPABLB-1P60509 514 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 POLR2GP62487 172 aaKnown RBP eCLIP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 PABPC1L2AQ5JQF8 200 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF322Q6U7Q0 402 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 NAGSQ8N159 534 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR51I2Q9H344 312 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 BET1LQ9NYM9 111 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 PITPNC1Q9UKF7 332 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SEPT4O43236 478 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 PRPH2P23942 346 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 PREPP48147 710 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 MTCP1P56278 107 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 TAS2R38P59533 333 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 DPPA3Q6W0C5 159 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 MBOAT2Q6ZWT7 520 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 LRP10Q7Z4F1 713 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF695Q8IW36 515 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 APCDD1Q8J025 514 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 GLYATL2Q8WU03 294 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 RHOFQ9HBH0 211 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 GPR173Q9NS66 373 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 POLLQ9UGP5 575 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 GPR32O75388 356 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 STBD1O95210 358 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 H2AFB1P0C5Y9 115 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 PCMT1P22061 227 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms