RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 UCN3Q969E3 161 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 RAB7BQ96AH8 199 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 C14orf79Q96F83 325 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SDSLQ96GA7 329 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ELMO2Q96JJ3 720 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CEP170P1Q96L14 293 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 FCRL1Q96LA6 429 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SAMD8Q96LT4 415 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 C12orf66Q96MD2 445 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 WFIKKN1Q96NZ8 548 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 VPS35Q96QK1 796 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 TAAR1Q96RJ0 339 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SLC6A7Q99884 636 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GAL3ST1Q99999 423 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 RASL11BQ9BPW5 248 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SLC35A5Q9BS91 424 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 NIPSNAP3BQ9BS92 247 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 TBCDQ9BTW9 1192 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CHAC1Q9BUX1 264 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ALG12Q9BV10 488 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 OSBPL11Q9BXB4 747 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GPR61Q9BZJ8 451 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ULBP2Q9BZM5 246 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SELENOIQ9C0D9 397 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 NAT10Q9H0A0 1025 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 ATG10Q9H0Y0 220 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HSD3B7Q9H2F3 369 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 CDC42EP4Q9H3Q1 356 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 SRMSQ9H3Y6 488 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 TMEM231Q9H6L2 316 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 NARFLQ9H6Q4 476 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 RPAP3Q9H6T3 665 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 SLC25A22Q9H936 323 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SIRT7Q9NRC8 400 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HOMER3Q9NSC5 361 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ARGLU1Q9NWB6 273 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 ATXN10Q9UBB4 475 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ZNF629Q9UEG4 869 aaPredicted RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 IL19Q9UHD0 177 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ATP6V1HQ9UI12 483 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 BTNL2Q9UIR0 455 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GNPTGQ9UJJ9 305 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ZNF229Q9UJW7 825 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 GGA2Q9UJY4 613 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 NUDCQ9Y266 331 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 ASF1AQ9Y294 204 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 SIGLEC9Q9Y336 463 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PLLPQ9Y342 182 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 AK6Q9Y3D8 172 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 STRAPQ9Y3F4 350 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 F11RQ9Y624 299 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 SPACA6W5XKT8 324 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 NID2Q14112 1375 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 PLEKHH1Q9ULM0 1364 aa0.17□□□□□ -2.38
VPS35-212ENST00000640313 HELZ2Q9BYK8 2649 aaKnown RBP0.17□□□□□ -2.38
VPS35-212ENST00000640313 PHF3Q92576 2039 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 SPAG9O60271 1321 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 MN1Q10571 1320 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 FRMPD4Q14CM0 1322 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TTC21BQ7Z4L5 1316 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SH3TC1Q8TE82 1336 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 COL27A1Q8IZC6 1860 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 TNS2Q63HR2 1409 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ATP10DQ9P241 1426 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 YEATS2Q9ULM3 1422 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 IGLV1-50A0A075B6I6 118 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 IGLV3-22A0A075B6J6 115 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 IGHV3-66A0A0C4DH42 116 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 A0A1B0GUL7 405 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 FAM230AA0A1W2PPH8 454 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 A6NIZ1 184 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 OR6C65A6NJZ3 312 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TRDCB7Z8K6 153 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 C12orf77C9JDV5 145 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 H0YHG0 523 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 RPL36A-HNRNPH2H7BZ11 118 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 K7EM74 188 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 KIF2AO00139 706 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 LGALS8O00214 317 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 DCTN6O00399 190 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 BTN3A3O00478 584 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CLDN5O00501 218 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 AGPAT2O15120 278 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ZSCAN12O43309 604 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ANGPTL7O43827 346 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 UGT1A9O60656 530 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 JAK2O60674 1132 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 KERAO60938 352 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 HSF2BPO75031 334 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TOM1L1O75674 476 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 UGT2B17O75795 530 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SRP72O76094 671 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 OR4F21O95013 312 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 MPZL1O95297 269 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 KLF8O95600 359 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 PTBP3O95758 552 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 LALBAP00709 142 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 IGKV1-17P01599 117 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CSF2P04141 144 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 LGALS2P05162 132 aa0.16□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms