RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MCCC2Q9HCC0 563 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 IMPAD1Q9NX62 359 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 TMEM5Q9Y2B1 443 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 CDH10Q9Y6N8 788 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 TLX3O43711 291 aaPredicted RBP18.22■□□□□ 0.51
CLN3-250ENST00000636839 PRKYO43930 277 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 TUBA3CQ13748 450 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 PLPPR5Q32ZL2 321 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 BROXQ5VW32 411 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 TUBA3EQ6PEY2 450 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 PLCZ1Q86YW0 608 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 C10orf53Q8N6V4 93 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 OR4K17Q8NGC6 315 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 TMEM43Q9BTV4 400 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 LRFN1Q9P244 771 aa18.22■□□□□ 0.51
CLN3-250ENST00000636839 SPTBN4Q9H254 2564 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 PINLYPA6NC86 204 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 NEURL1O76050 574 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 CRHBPP24387 322 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 NUDT6P53370 316 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 SUMO3P55854 103 aaPredicted RBP18.21■□□□□ 0.51
CLN3-250ENST00000636839 NUP107P57740 925 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 CDC42P60953 191 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 SLC27A4Q6P1M0 643 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 TMEM81Q6P7N7 255 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 PTCHD4Q6ZW05 846 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 IGFN1Q86VF2 1251 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 DND1Q8IYX4 353 aaKnown RBP18.21■□□□□ 0.51
CLN3-250ENST00000636839 TCEANCQ8N8B7 351 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 C1GALT1C1Q96EU7 318 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 UBQLN3Q9H347 655 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 PAK1IP1Q9NWT1 392 aaPredicted RBP18.21■□□□□ 0.51
CLN3-250ENST00000636839 GPR83Q9NYM4 423 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 TEKT2Q9UIF3 430 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 GPR52Q9Y2T5 361 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 HSPE1-MOB4S4R3N1 261 aa18.21■□□□□ 0.51
CLN3-250ENST00000636839 SLC1A7O00341 560 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 SLC2A10O95528 541 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 P04436 131 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 MSX1P28360 303 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 MASP1P48740 699 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 ZNF41P51814 821 aaPredicted RBP18.2■□□□□ 0.5
CLN3-250ENST00000636839 BLMHQ13867 455 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 ZNF74Q16587 644 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 THAP4Q8WY91 577 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 TMEM234Q8WY98 164 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 ST8SIA1Q92185 356 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 HDAC2Q92769 488 aaKnown RBP18.2■□□□□ 0.5
CLN3-250ENST00000636839 OSTF1Q92882 214 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 UBL7Q96S82 380 aaPredicted RBP18.2■□□□□ 0.5
CLN3-250ENST00000636839 C12orf10Q9HB07 376 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 HHATLQ9HCP6 504 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 SEC14L4Q9UDX3 406 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 RPH3AQ9Y2J0 694 aaPredicted RBP18.2■□□□□ 0.5
CLN3-250ENST00000636839 DMXL2Q8TDJ6 3036 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 PTGES3LE9PB15 166 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 OR7A10O76100 309 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 CCL11P51671 97 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 RPS6KA3P51812 740 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 ZBED5Q49AG3 693 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 TSPAN14Q8NG11 270 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 PTDSS2Q9BVG9 487 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 SLC19A3Q9BZV2 496 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 SCOCQ9UIL1 159 aa18.2■□□□□ 0.5
CLN3-250ENST00000636839 SNPHO15079 494 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 KLK10O43240 276 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 TLX2O43763 284 aaPredicted RBP18.19■□□□□ 0.5
CLN3-250ENST00000636839 TRIM3O75382 744 aaPredicted RBP18.19■□□□□ 0.5
CLN3-250ENST00000636839 RFPL3SP0C7P2 107 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 SMSP52788 366 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 SLC35F1Q5T1Q4 408 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 TIGD3Q6B0B8 471 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 SMARCD3Q6STE5 483 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 CASP12Q6UXS9 341 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 OR1J4Q8NGS1 313 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 ARL5BQ96KC2 179 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 CCNL2Q96S94 520 aaPredicted RBP18.19■□□□□ 0.5
CLN3-250ENST00000636839 TMEM185BQ9H7F4 350 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 SLC25A19Q9HC21 320 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 SACM1LQ9NTJ5 587 aa18.19■□□□□ 0.5
CLN3-250ENST00000636839 ANKRD33BA6NCL7 494 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 NPIPB7O75200 414 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 SLC9A3P48764 834 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 C19orf57Q0VDD7 668 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 OR1C1Q15619 314 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 SNAPC1Q16533 368 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 DEFB109BQ30KR1 87 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 DEPDC4Q8N2C3 294 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 MOSPD2Q8NHP6 518 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 FGF11Q92914 225 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 SLC25A36Q96CQ1 311 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 UTP23Q9BRU9 249 aaKnown RBP18.18■□□□□ 0.5
CLN3-250ENST00000636839 DNAJC27Q9NZQ0 273 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 CEP295Q9C0D2 2601 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 BLOC1S5-TXNDC5H3BN57 136 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 BHLHE40O14503 412 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 SLC25A12O75746 678 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 PEPDP12955 493 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 PCYT1AP49585 367 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms