RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PDPK1O15530 556 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 ZNF264O43296 627 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 PMS2P2O95744 297 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 LGI1O95970 557 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 IGLV1-44P01699 117 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 GSTA2P09210 222 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 ANPEPP15144 967 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 ATP12AP54707 1039 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 TMEM33P57088 247 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 OR2B6P58173 313 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 UBE2NP61088 152 aaKnown RBP12.49□□□□□ -0.41
CLN3-249ENST00000636685 DCAF12L2Q5VW00 463 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 DOK3Q7L591 496 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 OR1K1Q8NGR3 316 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 SLC25A43Q8WUT9 341 aaPredicted RBP12.49□□□□□ -0.41
CLN3-249ENST00000636685 ST8SIA1Q92185 356 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 BOD1Q96IK1 185 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 CCT8L2Q96SF2 557 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 OR11A1Q9GZK7 315 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 MMP27Q9H306 513 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 REV1Q9UBZ9 1251 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 DTNAQ9Y4J8 743 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 TIMM22Q9Y584 194 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 A8MT66 165 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 EIF3HO15372 352 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLN3-249ENST00000636685 EIF4E2O60573 245 aaKnown RBP12.48□□□□□ -0.41
CLN3-249ENST00000636685 CYP7B1O75881 506 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 RNASE1P07998 156 aaKnown RBP12.48□□□□□ -0.41
CLN3-249ENST00000636685 UBL4AP11441 157 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 OMGP23515 440 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 SERPINB8P50452 374 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 MRPS25P82663 173 aaKnown RBP12.48□□□□□ -0.41
CLN3-249ENST00000636685 BAMBIQ13145 260 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 NAB1Q13506 487 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 MSMPQ1L6U9 139 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 TUSC1Q2TAM9 212 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 ZNF385BQ569K4 471 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 ZCCHC12Q6PEW1 402 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 GPRIN3Q6ZVF9 776 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 BCL2L2Q92843 193 aaPredicted RBP12.48□□□□□ -0.41
CLN3-249ENST00000636685 EGLN2Q96KS0 407 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 KCNA7Q96RP8 456 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 C1QTNF3Q9BXJ4 246 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 C7orf69Q9H7B7 122 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 ZMAT3Q9HA38 289 aaKnown RBP12.48□□□□□ -0.41
CLN3-249ENST00000636685 CTPS2Q9NRF8 586 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 TMEM45AQ9NWC5 275 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 SNX12Q9UMY4 172 aa12.48□□□□□ -0.41
CLN3-249ENST00000636685 A0A096LPE4 126 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 IGHV2OR16-5A0A0B4J2B6 119 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 A0A1W2PPZ6 126 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 NPIPB9F8W1W9 429 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 DYNC1I1O14576 645 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 PIP5K1BO14986 540 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 DNPH1O43598 174 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 SYNGR3O43761 229 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 EFNA1P20827 205 aaPredicted RBP12.47□□□□□ -0.41
CLN3-249ENST00000636685 STX2P32856 288 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 SEC24CP53992 1094 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 H3F3AP84243 136 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 POU3F1Q03052 451 aaPredicted RBP12.47□□□□□ -0.41
CLN3-249ENST00000636685 SKP2Q13309 424 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 SNTB2Q13425 540 aaKnown RBP12.47□□□□□ -0.41
CLN3-249ENST00000636685 LASP1Q14847 261 aaKnown RBP12.47□□□□□ -0.41
CLN3-249ENST00000636685 UAP1Q16222 522 aaPredicted RBP12.47□□□□□ -0.41
CLN3-249ENST00000636685 C3orf36Q3SXR2 165 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 UNC50Q53HI1 259 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 AVPI1Q5T686 147 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 BCL6BQ8N143 479 aaPredicted RBP12.47□□□□□ -0.41
CLN3-249ENST00000636685 SLC35F6Q8N357 371 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 SYT14Q8NB59 555 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 AURKBQ96GD4 344 aaPredicted RBP12.47□□□□□ -0.41
CLN3-249ENST00000636685 ZNF382Q96SR6 550 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 MRPL37Q9BZE1 423 aaKnown RBP12.47□□□□□ -0.41
CLN3-249ENST00000636685 PIGUQ9H490 435 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 DUSP22Q9NRW4 184 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 ACER3Q9NUN7 267 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 PPP2R2CQ9Y2T4 447 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 KCNE3Q9Y6H6 103 aa12.47□□□□□ -0.41
CLN3-249ENST00000636685 ARPC4-TTLL3A0A0A6YYG9 625 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 M0R233 179 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 DNAJA2O60884 412 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 DEAF1O75398 565 aaPredicted RBP12.46□□□□□ -0.41
CLN3-249ENST00000636685 RP2O75695 350 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 NCR1O76036 304 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 HMGN2P05204 90 aaKnown RBP12.46□□□□□ -0.41
CLN3-249ENST00000636685 SBK3P0C264 359 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 ALDH3B1P43353 468 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 DAG1Q14118 895 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 SLC17A1Q14916 467 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 ATP6AP1LQ52LC2 224 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 DCST2Q5T1A1 773 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 PDZK1Q5T2W1 519 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 KRT80Q6KB66 452 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 AAED1Q7RTV5 226 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 C17orf53Q8N3J3 647 aaPredicted RBP12.46□□□□□ -0.41
CLN3-249ENST00000636685 ZIC4Q8N9L1 334 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 POMGNT2Q8NAT1 580 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 ZFP28Q8NHY6 868 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 TMEM234Q8WY98 164 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms