RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SPOCK3Q9BQ16 436 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 OR11A1Q9GZK7 315 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 ADAM19Q9H013 955 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 Q9UFV3 132 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 RNF6Q9Y252 685 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 ARHGAP21Q5T5U3 1957 aa16.22■□□□□ 0.19
CLN3-239ENST00000628023 A0A1B0GWA3 101 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 ELOA3DA6NLF2 546 aaPredicted RBP16.21■□□□□ 0.19
CLN3-239ENST00000628023 SULT2B1O00204 365 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 TGM6O95932 706 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 SERPINA1P01009 418 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 TMIGD3P0DMS9 266 aaPredicted RBP16.21■□□□□ 0.19
CLN3-239ENST00000628023 T-ENOLP0DO92 83 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 HSD17B1P14061 328 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 CPOXP36551 454 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 MAP2K6P52564 334 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 OR1Q1Q15612 314 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 ELOA3BQ3SY89 546 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 ALG10BQ5I7T1 473 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 CARM1Q86X55 608 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 LSMEM1Q8N8F7 131 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 ELOA3Q8NG57 546 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 OR6T1Q8NGN1 323 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 DNAJA4Q8WW22 397 aaPredicted RBP16.21■□□□□ 0.19
CLN3-239ENST00000628023 DNAJA3Q96EY1 480 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 ZFP3Q96NJ6 502 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 MCHR1Q99705 422 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 WFDC6Q9BQY6 131 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 PRR14Q9BWN1 585 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 COQ10BQ9H8M1 238 aa16.21■□□□□ 0.19
CLN3-239ENST00000628023 CPSF4LA6NMK7 179 aaKnown RBP16.2■□□□□ 0.18
CLN3-239ENST00000628023 FAM90A27PA6NNH2 459 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 ZNF208O43345 1280 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 FMO6PO60774 539 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 TOXO94900 526 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 PLGP00747 810 aaPredicted RBP16.2■□□□□ 0.18
CLN3-239ENST00000628023 TNFRSF1BP20333 461 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 CLK1P49759 484 aaKnown RBP16.2■□□□□ 0.18
CLN3-239ENST00000628023 CSNK2A1P68400 391 aaPredicted RBP16.2■□□□□ 0.18
CLN3-239ENST00000628023 MYBPHQ13203 477 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 SPATS1Q496A3 300 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 GLYATQ6IB77 296 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 OR2A2Q6IF42 318 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 ULK3Q6PHR2 472 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 DEF8Q6ZN54 512 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 GCNT2Q8N0V5 402 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 INTS12Q96CB8 462 aaKnown RBP16.2■□□□□ 0.18
CLN3-239ENST00000628023 SRXN1Q9BYN0 137 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 MAGEL2Q9UJ55 1249 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 RPS6KA6Q9UK32 745 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 HDGFL3Q9Y3E1 203 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 KIAA1549Q9HCM3 1950 aa16.2■□□□□ 0.18
CLN3-239ENST00000628023 OTOGQ6ZRI0 2925 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 C19orf84I3L1E1 186 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 DVL2O14641 736 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 RCBTB2O95199 551 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 PNMTP11086 282 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 BMP5P22003 454 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 CTSSP25774 331 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 CEACAM8P31997 349 aaPredicted RBP16.19■□□□□ 0.18
CLN3-239ENST00000628023 OR1E2P47887 323 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 DIO1P49895 249 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 RAC3P60763 192 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 SELENOWP63302 87 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 BNIP2Q12982 314 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 CDSNQ15517 529 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 NPTX1Q15818 432 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 ZNF239Q16600 458 aaKnown RBP16.19■□□□□ 0.18
CLN3-239ENST00000628023 ENTPD8Q5MY95 495 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 TMPPEQ6ZT21 453 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 FKBP9P1Q75LS8 142 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 ATG4DQ86TL0 474 aaPredicted RBP16.19■□□□□ 0.18
CLN3-239ENST00000628023 RBM45Q8IUH3 476 aaKnown RBP16.19■□□□□ 0.18
CLN3-239ENST00000628023 ZNF295-AS1Q8N0V1 137 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 ARHGAP24Q8N264 748 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 NAXEQ8NCW5 288 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 OR4D11Q8NGI4 311 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 ZHX1-C8orf76Q96EF9 292 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 C14orf79Q96F83 325 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 SLC47A1Q96FL8 570 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 ARL5BQ96KC2 179 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 PRPF19Q9UMS4 504 aaKnown RBP16.19■□□□□ 0.18
CLN3-239ENST00000628023 SNX13Q9Y5W8 968 aa16.19■□□□□ 0.18
CLN3-239ENST00000628023 DCHS2Q6V1P9 2916 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 IGHV3-15A0A0B4J1V0 119 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 A0A0B4J2E0 115 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 A0A1B0GX12 115 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 A8MVM7 634 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 AQP8O94778 261 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 ENPP1P22413 925 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 IDUAP35475 653 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 MSX2P35548 267 aaPredicted RBP16.18■□□□□ 0.18
CLN3-239ENST00000628023 OR2B6P58173 313 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 TAS2R41P59536 307 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 ZNF613Q6PF04 617 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 MEX3BQ6ZN04 569 aaKnown RBP16.18■□□□□ 0.18
CLN3-239ENST00000628023 CBLL1Q75N03 491 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 FCRLAQ7L513 359 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 VTCN1Q7Z7D3 282 aa16.18■□□□□ 0.18
CLN3-239ENST00000628023 LSRQ86X29 649 aaPredicted RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms