RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CD80P33681 288 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 NMUP48645 174 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 PRKXP51817 358 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 RAP1BP61224 184 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 CACNG7P62955 275 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 CNTN2Q02246 1040 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 AP1B1Q10567 949 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 GAMTQ14353 236 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 PSG5Q15238 335 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 SLC5A12Q1EHB4 618 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 BOLA3Q53S33 107 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 ZNF311Q5JNZ3 666 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 KLF17Q5JT82 389 aaPredicted RBP1.14□□□□□ -2.23
SCN1A-208ENST00000625916 C1orf100Q5SVJ3 147 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 C11orf71Q6IPW1 123 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 TMIGD1Q6UXZ0 262 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 RFLNAQ6ZTI6 216 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 GDPD3Q7L5L3 318 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 MFSD6LQ8IWD5 586 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 KDM8Q8N371 416 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 BCORP1Q8N888 145 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 BRSK1Q8TDC3 778 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 ST8SIA1Q92185 356 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 RPL3LQ92901 407 aaKnown RBP1.14□□□□□ -2.23
SCN1A-208ENST00000625916 VPS35Q96QK1 796 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 SELENOIQ9C0D9 397 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 ROGDIQ9GZN7 287 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 RAB17Q9H0T7 212 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 RHOJQ9H4E5 214 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 DHX33Q9H6R0 707 aaKnown RBP1.14□□□□□ -2.23
SCN1A-208ENST00000625916 SMYD3Q9H7B4 428 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 VCPKMTQ9H867 229 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 ACTR8Q9H981 624 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 VAT1LQ9HCJ6 419 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 SLC25A37Q9NYZ2 338 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 AIPL1Q9NZN9 384 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 DEC1Q9P2X7 70 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 GNPTGQ9UJJ9 305 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 ZNF229Q9UJW7 825 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 TRAF3IP3Q9Y228 551 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 BRWD3Q6RI45 1802 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 ATP10DQ9P241 1426 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 MROH7-TTC4A0A0A0MT08 1334 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 SPAG9O60271 1321 aaKnown RBP1.14□□□□□ -2.23
SCN1A-208ENST00000625916 CLSPNQ9HAW4 1339 aa1.14□□□□□ -2.23
SCN1A-208ENST00000625916 IGHV2-70DA0A0C4DH43 119 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 A0A0G2JN53 185 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 E9PBE3 544 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 HCRTR1O43613 425 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 LGI1O95970 557 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 OPN1LWP04000 364 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 ETS1P14921 441 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 MUC1P15941 1255 aaPredicted RBP1.13□□□□□ -2.23
SCN1A-208ENST00000625916 NPY1RP25929 384 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 PTGFRP43088 359 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 KLK7P49862 253 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 KPNA2P52292 529 aaKnown RBP1.13□□□□□ -2.23
SCN1A-208ENST00000625916 EFNB2P52799 333 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 CRISP3P54108 245 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 PDK1Q15118 436 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 TRIP10Q15642 601 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 PRSS8Q16651 343 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 NSUN5P1Q3KNT7 163 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 PARP10Q53GL7 1025 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 ZNF621Q6ZSS3 439 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 NEGR1Q7Z3B1 354 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 ZNF571Q7Z3V5 609 aaPredicted RBP1.13□□□□□ -2.23
SCN1A-208ENST00000625916 LHFPL4Q7Z7J7 247 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 CAMK2N1Q7Z7J9 78 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 TPRA1Q86W33 373 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 MISPQ8IVT2 679 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 C12orf56Q8IXR9 622 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 KIR3DL3Q8N743 410 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 CCDC54Q8NEL0 328 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 OR6C4Q8NGE1 309 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 OR51G2Q8NGK0 314 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 OR56B4Q8NH76 319 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 ARPC1AQ92747 370 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 MYLPFQ96A32 169 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 P2RY13Q9BPV8 354 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 SIRT7Q9NRC8 400 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 AGPAT5Q9NUQ2 364 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 SPASTQ9UBP0 616 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 CARHSP1Q9Y2V2 147 aaKnown RBP1.13□□□□□ -2.23
SCN1A-208ENST00000625916 ALG6Q9Y672 507 aa1.13□□□□□ -2.23
SCN1A-208ENST00000625916 PLA2R1Q13018 1463 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 HIP1O00291 1037 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 AGPAT2O15120 278 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 SS18L1O75177 396 aaPredicted RBP1.12□□□□□ -2.23
SCN1A-208ENST00000625916 VPS26AO75436 327 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 B3GAT3O94766 335 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 IGF1P05019 195 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 POU2F1P14859 743 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 PSMA2P25787 234 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 FGF9P31371 208 aaPredicted RBP1.12□□□□□ -2.23
SCN1A-208ENST00000625916 FMO3P31513 532 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 YWHABP31946 246 aaKnown RBP1.12□□□□□ -2.23
SCN1A-208ENST00000625916 SLC26A3P40879 764 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 LEPP41159 167 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 GLP1RP43220 463 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms