RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LTBQ06643 244 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 PPA1Q15181 289 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 FOXB2Q5VYV0 432 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 NXNL2Q5VZ03 156 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 HBMQ6B0K9 141 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 VASNQ6EMK4 673 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 OR56B4Q8NH76 319 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 RRNAD1Q96FB5 475 aaKnown RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 MYADMQ96S97 322 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 METTL17Q9H7H0 456 aaPredicted RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 ENY2Q9NPA8 101 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 H7C1C5 153 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 GAPDHSO14556 408 aaPredicted RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 AGPAT2O15120 278 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 CSO75390 466 aaKnown RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 TEAD1P28347 426 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 LCN6P62502 163 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 REEP5Q00765 189 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 CTU2Q2VPK5 515 aaKnown RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 RTL10Q7L3V2 364 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 TMEM106AQ96A25 262 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 OR2M2Q96R28 347 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 NXF5Q9H1B4 397 aaKnown RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 CCDC86Q9H6F5 360 aaKnown RBP13.04□□□□□ -0.32
CPSF1-212ENST00000616140 NCDNQ9UBB6 729 aa13.04□□□□□ -0.32
CPSF1-212ENST00000616140 A0A1B0GWA3 101 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 hCG_1807616A0A1W2PRN6 198 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 BPNT1O95861 308 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 RAB40ALP0C0E4 278 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 GAAP10253 952 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 BMP1P13497 986 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 RAB3AP20336 220 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 TRIM23P36406 574 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 HENMT1Q5T8I9 393 aaKnown RBP13.03□□□□□ -0.32
CPSF1-212ENST00000616140 LYSMD2Q8IV50 215 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 IL17RCQ8NAC3 791 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 OR5D14Q8NGL3 314 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 TMEM255BQ8WV15 326 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 RAB40AQ8WXH6 277 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 ELP4Q96EB1 424 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 CDCA3Q99618 268 aaPredicted RBP13.03□□□□□ -0.32
CPSF1-212ENST00000616140 ALG12Q9BV10 488 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 LSM5Q9Y4Y9 91 aaKnown RBP13.03□□□□□ -0.32
CPSF1-212ENST00000616140 B3GALT1Q9Y5Z6 326 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 PLCH1Q4KWH8 1693 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 MYO5AQ9Y4I1 1855 aaKnown RBP13.03□□□□□ -0.32
CPSF1-212ENST00000616140 ZNF264O43296 627 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 EIF2S3P41091 472 aaKnown RBP13.03□□□□□ -0.32
CPSF1-212ENST00000616140 SRYQ05066 204 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 GPR157Q5UAW9 335 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 DPY19L4Q7Z388 723 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 C12orf45Q8N5I9 185 aaPredicted RBP13.03□□□□□ -0.32
CPSF1-212ENST00000616140 NMNAT3Q96T66 252 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 UBQLN3Q9H347 655 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 PDFQ9HBH1 243 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 PLEKHJ1Q9NW61 149 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 SLX4Q8IY92 1834 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 ICE1Q9Y2F5 2266 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 K7ESM1 405 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 IDUAP35475 653 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 LYPD4Q6UWN0 246 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 OR52I1Q8NGK6 324 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 MYEOVQ96EZ4 313 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 SFXN2Q96NB2 322 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 C11orf54Q9H0W9 315 aaPredicted RBP13.03□□□□□ -0.32
CPSF1-212ENST00000616140 A4GALTQ9NPC4 353 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 SLC5A10A0PJK1 596 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 SRPX2O60687 465 aaPredicted RBP13.03□□□□□ -0.32
CPSF1-212ENST00000616140 PSMB1P20618 241 aaKnown RBP13.03□□□□□ -0.32
CPSF1-212ENST00000616140 EIF2DP41214 584 aaKnown RBP13.03□□□□□ -0.32
CPSF1-212ENST00000616140 FASLGP48023 281 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 SLC48A1Q6P1K1 146 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 SFXN4Q6P4A7 337 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 SPTSSAQ969W0 71 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 PRRT1Q99946 306 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 C1QTNF3Q9BXJ4 246 aa13.03□□□□□ -0.32
CPSF1-212ENST00000616140 GFYI3L273 518 aa13.02□□□□□ -0.32
CPSF1-212ENST00000616140 CNOT4O95628 575 aaKnown RBP13.02□□□□□ -0.32
CPSF1-212ENST00000616140 TSPAN15O95858 294 aa13.02□□□□□ -0.32
CPSF1-212ENST00000616140 OR2T7P0C7T2 308 aa13.02□□□□□ -0.32
CPSF1-212ENST00000616140 RPS19P39019 145 aaKnown RBP13.02□□□□□ -0.32
CPSF1-212ENST00000616140 GDNFP39905 211 aa13.02□□□□□ -0.32
CPSF1-212ENST00000616140 SGPP2Q8IWX5 399 aa13.02□□□□□ -0.32
CPSF1-212ENST00000616140 TMEM185AQ8NFB2 350 aa13.02□□□□□ -0.32
CPSF1-212ENST00000616140 OR2T27Q8NH04 317 aa13.02□□□□□ -0.32
CPSF1-212ENST00000616140 LILRB4Q8NHJ6 448 aa13.02□□□□□ -0.32
CPSF1-212ENST00000616140 GIMAP1Q8WWP7 306 aa13.02□□□□□ -0.32
CPSF1-212ENST00000616140 SAV1Q9H4B6 383 aaPredicted RBP13.02□□□□□ -0.32
CPSF1-212ENST00000616140 SRPK3Q9UPE1 567 aa13.02□□□□□ -0.32
CPSF1-212ENST00000616140 CDHR4A6H8M9 788 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 LAMTOR5O43504 91 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 HRGP04196 525 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 FOXK2Q01167 660 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 ABHD4Q8TB40 342 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 LGALS14Q8TCE9 139 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 ARL11Q969Q4 196 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 ZBTB8AQ96BR9 441 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 ZBP1Q9H171 429 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 DUSP21Q9H596 190 aa13.02□□□□□ -0.33
CPSF1-212ENST00000616140 RNF167Q9H6Y7 350 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms