RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZC3H12DA2A288 527 aaKnown RBP14.36□□□□□ -0.11
TRIM28-213ENST00000598355 PRORSD1PA6NEY8 169 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 ZNF716A6NP11 495 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 SULT2B1O00204 365 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 MRASO14807 208 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 TPST1O60507 370 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 NPIPB7O75200 414 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 PRKD3O94806 890 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 MFN2O95140 757 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 EPXP11678 715 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 SLC16A1P53985 500 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 FAM27E3Q08E93 113 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 CYP51A1Q16850 503 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 GLIPR1L2Q4G1C9 344 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 TFAP2EQ6VUC0 442 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 ATG4DQ86TL0 474 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-213ENST00000598355 MTDHQ86UE4 582 aaKnown RBP14.36□□□□□ -0.11
TRIM28-213ENST00000598355 SLC30A8Q8IWU4 369 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 BHLHE22Q8NFJ8 381 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-213ENST00000598355 DDIT4LQ96D03 193 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 ZNF607Q96SK3 696 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 POTEKPQ9BYX7 375 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 EVA1AQ9H8M9 152 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 C12orf10Q9HB07 376 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 ARMCX1Q9P291 453 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 TMEM181Q9P2C4 612 aa14.36□□□□□ -0.11
TRIM28-213ENST00000598355 RAI1Q7Z5J4 1906 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-213ENST00000598355 SH3D21A4FU49 640 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 A6NNC1 897 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 ZNF724A8MTY0 619 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 FRS3O43559 492 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 IMPDH2P12268 514 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 HTR2AP28223 471 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 UGT2B10P36537 528 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 CRYBA2P53672 197 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 DMTNQ08495 405 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 CYLC2Q14093 348 aaPredicted RBP14.35□□□□□ -0.11
TRIM28-213ENST00000598355 RABL3Q5HYI8 236 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 NUFIP2Q7Z417 695 aaKnown RBP14.35□□□□□ -0.11
TRIM28-213ENST00000598355 SPATA21Q7Z572 469 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 LSRQ86X29 649 aaPredicted RBP14.35□□□□□ -0.11
TRIM28-213ENST00000598355 TUSC5Q8IXB3 177 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 OR10A6Q8NH74 314 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 TESQ9UGI8 421 aaKnown RBP14.35□□□□□ -0.11
TRIM28-213ENST00000598355 AKAP9Q99996 3911 aa14.35□□□□□ -0.11
TRIM28-213ENST00000598355 ZNF814B7Z6K7 855 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 DYNC1I1O14576 645 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 SERPINB7O75635 380 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 YES1P07947 543 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 TFPIP10646 304 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 POU2F1P14859 743 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 PSMB1P20618 241 aaKnown RBP14.34□□□□□ -0.11
TRIM28-213ENST00000598355 DRD4P21917 467 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 AQP1P29972 269 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 LSP1P33241 339 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 SEC24CP53992 1094 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 COPZ1P61923 177 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 RASGEF1BQ0VAM2 473 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 VMACQ2NL98 169 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 TMEM201Q5SNT2 666 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 STAC2Q6ZMT1 411 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 BEND4Q6ZU67 534 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 CCDC80Q76M96 950 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 GABRG1Q8N1C3 465 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 GPR32P1Q8NGA4 272 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 RP9Q8TA86 221 aaKnown RBP14.34□□□□□ -0.11
TRIM28-213ENST00000598355 LINC01560Q8TB33 94 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 ZNF300Q96RE9 604 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-213ENST00000598355 SH3GL1Q99961 368 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 MYLK2Q9H1R3 596 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 OR10A4Q9H209 315 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 RASSF1Q9NS23 344 aa14.34□□□□□ -0.11
TRIM28-213ENST00000598355 LIPT2A6NK58 231 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 SNX3O60493 162 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 TPST2O60704 377 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 EIF1BO60739 113 aaKnown RBP14.33□□□□□ -0.12
TRIM28-213ENST00000598355 CCDC22O60826 627 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 RAMP1O60894 148 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 C8BP07358 591 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 CD247P20963 164 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 OR3A2P47893 321 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 HOXC5Q00444 222 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 EGR4Q05215 589 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 NRF1Q16656 503 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 MMEL1Q495T6 779 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 C8orf82Q6P1X6 216 aaPredicted RBP14.33□□□□□ -0.12
TRIM28-213ENST00000598355 PAQR6Q6TCH4 344 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 PATL1Q86TB9 770 aaKnown RBP14.33□□□□□ -0.12
TRIM28-213ENST00000598355 TREML1Q86YW5 311 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 ARMC8Q8IUR7 673 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 CADM2Q8N3J6 435 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 PCYOX1LQ8NBM8 494 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 PIGXQ8TBF5 258 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 STK35Q8TDR2 534 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 ZHX1-C8orf76Q96EF9 292 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 WFDC6Q9BQY6 131 aa14.33□□□□□ -0.12
TRIM28-213ENST00000598355 GPATCH1Q9BRR8 931 aaKnown RBP14.33□□□□□ -0.12
TRIM28-213ENST00000598355 LOC100653049A0A140TA62 436 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 A0A1B0GWA3 101 aa14.32□□□□□ -0.12
TRIM28-213ENST00000598355 A8MVM7 634 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms